5UU7

Tetragonal thermolysin (295 K) in the presence of 50% mpd


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP295Protein: 50 mg/mL in 45% DMSO, 0.5 M ZnCl2 Well: ~2 M AmSO4
Crystal Properties
Matthews coefficientSolvent content
3.7667.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.026α = 90
b = 98.026β = 90
c = 107.522γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295CCDOXFORD ONYX CCD2015-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEOXFORD DIFFRACTION ENHANCE ULTRA1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.620.899.40.99914.74.213113918.4059349642
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.698.40.5361.12.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.6000139070120.7587749841.33421409687130994398399.2138269510.1448624395730.1444939000790.15649109394725.8901447676
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d9.8657460216
f_angle_d0.914028563225
f_chiral_restr0.0565553827655
f_bond_d0.0078748023055
f_plane_restr0.0061229781725
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2432
Nucleic Acid Atoms
Solvent Atoms253
Heterogen Atoms42

Software

Software
Software NamePurpose
PHENIXrefinement
CrysalisProdata collection
CrysalisProdata reduction
SCALAdata scaling
PHENIXphasing