6H8C

Structure of the human GABARAPL2 protein in complex with the UBA5 LIR motif


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 600 MHz 600
22D 1H-15N HSQC1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 600 MHz 600
32D 1H-13C HSQC0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
42D 1H-13C HSQC1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
53D HNCACB0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 800 MHz 800
63D HNCACB1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 800 MHz 800
83D (HCA)CO(CA)NH0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 700 MHz 700
73D (HCA)CO(CA)NH1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 700 MHz 700
143D H(CC)(CO)NH-TOCSY0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
133D H(CC)(CO)NH-TOCSY1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
123D (H)CC(CO)NH-TOCSY0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
113D (H)CC(CO)NH-TOCSY1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
103D 1H-15N NOESY0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
93D 1H-15N NOESY1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
163D 1H-13C NOESY0.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
183D 1H-13C NOESY1.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 950 MHz 950
173D NOESY-[13C,1H]-HSQC 13C/15N filtered in F10.6 mM [U-99% 13C; U-99% 15N] GABARAPL2, 1.0 mM No Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
153D NOESY-[13C,1H]-HSQC 13C/15N filtered in F11.0 mM No GABARAPL2, 0.6 mM [U-99% 13C; U-99% 15N] Ubiquitin-like modifier-activating enzyme 5 (UBA5) LIR motif, 50 mM No sodium phosphate, 100 mM No sodium chloride, 4.6 mM No sodium azide95% H2O/5% D2O100 mM7.0AMBIENT atm298Bruker Bruker Avance 900 MHz 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerBruker Avance 950 MHz950
2BrukerBruker Avance 900 MHz900
3BrukerBruker Avance 800 MHz800
4BrukerBruker Avance 700 MHz700
5BrukerBruker Avance 600 MHz600
6BrukerBruker Avance 500 MHz500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsAMBER94OPAL
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.1Bruker Biospin
2chemical shift assignmentSparky1.114Goddard
3peak pickingCYANA3.97Guntert, Mumenthaler and Wuthrich
4structure calculationCYANA3.97Guntert, Mumenthaler and Wuthrich
5refinementOPALLuginbuhl, Guntert, Billeter and Wuthrich