X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1T3T 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2982M Ammonium Sulphate
Crystal Properties
Matthews coefficientSolvent content
3.0960.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.8α = 90
b = 146.8β = 90
c = 141.2γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-08-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID291.0723ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.754099.80.06917.67172853
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.80.483

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1T3T1.7539.72164207864399.790.152250.150750.18052RANDOM24.286
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.373
r_dihedral_angle_4_deg16.898
r_dihedral_angle_3_deg13.608
r_long_range_B_refined7.127
r_long_range_B_other6.906
r_dihedral_angle_1_deg6.655
r_scangle_other5.318
r_scbond_it3.938
r_scbond_other3.84
r_mcangle_it2.945
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.373
r_dihedral_angle_4_deg16.898
r_dihedral_angle_3_deg13.608
r_long_range_B_refined7.127
r_long_range_B_other6.906
r_dihedral_angle_1_deg6.655
r_scangle_other5.318
r_scbond_it3.938
r_scbond_other3.84
r_mcangle_it2.945
r_mcangle_other2.945
r_mcbond_it2.304
r_mcbond_other2.304
r_angle_refined_deg2.292
r_angle_other_deg1.166
r_chiral_restr0.141
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9931
Nucleic Acid Atoms
Solvent Atoms1204
Heterogen Atoms294

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing