X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29311% PEG 8000 0.1M Imidazole pH 8 0.2M Calcium acetate
Crystal Properties
Matthews coefficientSolvent content
3.665.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.6α = 90
b = 152.94β = 90
c = 172.71γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293PIXELDECTRIS PILATUS 6M2016-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC1.12712ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.76298.90.0470.05219.14.639641
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.774.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.7354.8636543193098.590.178360.175930.2247RANDOM89.398
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.90.04-0.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.585
r_dihedral_angle_3_deg20.567
r_dihedral_angle_4_deg18.049
r_dihedral_angle_1_deg9.193
r_long_range_B_refined7.351
r_long_range_B_other7.34
r_scangle_other4.977
r_mcangle_it4.637
r_mcangle_other4.637
r_scbond_it3.226
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.585
r_dihedral_angle_3_deg20.567
r_dihedral_angle_4_deg18.049
r_dihedral_angle_1_deg9.193
r_long_range_B_refined7.351
r_long_range_B_other7.34
r_scangle_other4.977
r_mcangle_it4.637
r_mcangle_other4.637
r_scbond_it3.226
r_scbond_other3.177
r_mcbond_it2.923
r_mcbond_other2.913
r_angle_refined_deg1.932
r_angle_other_deg1.337
r_chiral_restr0.079
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.004
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6825
Nucleic Acid Atoms
Solvent Atoms63
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHENIXphasing