X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 M citrate pH 5, 23% PEG4000, seeded.
Crystal Properties
Matthews coefficientSolvent content
2.2445.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.126α = 90
b = 59.886β = 90
c = 68.018γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42010-05-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54182

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5964562.80.0780.0787.22.3920599
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6511.50.3871.61.08

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.64519521103962.720.20340.20130.2459RANDOM20.789
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.19-0.01-1.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.167
r_dihedral_angle_4_deg18.133
r_dihedral_angle_3_deg13.478
r_dihedral_angle_1_deg6.568
r_angle_refined_deg1.417
r_angle_other_deg0.918
r_symmetry_vdw_other0.223
r_nbd_other0.191
r_symmetry_vdw_refined0.179
r_nbd_refined0.178
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.167
r_dihedral_angle_4_deg18.133
r_dihedral_angle_3_deg13.478
r_dihedral_angle_1_deg6.568
r_angle_refined_deg1.417
r_angle_other_deg0.918
r_symmetry_vdw_other0.223
r_nbd_other0.191
r_symmetry_vdw_refined0.179
r_nbd_refined0.178
r_nbtor_refined0.174
r_xyhbond_nbd_refined0.169
r_symmetry_hbond_refined0.165
r_nbtor_other0.084
r_chiral_restr0.081
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1875
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms49

Software

Software
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
BUSTERphasing