6YRZ

Crystal structure of FAP et pH 8.5 after illumination at 150K

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6YRU

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	281	PEG 4000 25-40%, Na citrate 100 mM, spermidine 10mM

Crystal Properties
Matthews coefficient	Solvent content
3.04	59.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 90.47	α = 90
b = 104.56	β = 90
c = 156.9	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	150	PIXEL	DECTRIS EIGER X 4M		2019-09-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 1	0.979	SOLEIL	PROXIMA 1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.82	87	99.7	0.086	0.089	0.999	18.38	13.518		66267			37.236

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.82	1.93	98.2		1.038	1.078	0.816	2.09	13.489

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6YRU	1.824	46.819	66267	3312	99.666	0.16	0.1583	0.1881	33.727

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.011			-0.024		0.013

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.17
r_dihedral_angle_4_deg	16.822
r_dihedral_angle_3_deg	13.923
r_dihedral_angle_1_deg	7.397
r_lrange_it	6.887
r_lrange_other	6.784
r_scangle_it	5.756
r_scangle_other	5.755
r_scbond_it	3.947
r_scbond_other	3.946
r_mcangle_it	3.632
r_mcangle_other	3.632
r_mcbond_it	2.975
r_mcbond_other	2.973
r_angle_refined_deg	1.728
r_angle_other_deg	1.465
r_symmetry_xyhbond_nbd_refined	0.311
r_symmetry_nbd_refined	0.285
r_nbd_other	0.263
r_symmetry_xyhbond_nbd_other	0.215
r_nbd_refined	0.208
r_symmetry_nbd_other	0.187
r_xyhbond_nbd_refined	0.176
r_nbtor_refined	0.168
r_chiral_restr	0.089
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.012
r_gen_planes_refined	0.012
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4216
Nucleic Acid Atoms
Solvent Atoms	440
Heterogen Atoms	109

Software

Software
Software Name	Purpose
REFMAC	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing