X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7B53 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52940.1M citrate pH 5.5 10% PEG4K 19.7% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2545.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.137α = 97.08
b = 58.153β = 91.49
c = 74.348γ = 104.93
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2020-02-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.96862DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6756.1397.10.9978.33.599570
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.741.830.465

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7B531.6756.1399570535696.980.198180.196680.22586RANDOM34.444
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.241.07-0.01-0.180.41-0.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.061
r_dihedral_angle_4_deg14.544
r_dihedral_angle_3_deg12.377
r_long_range_B_refined7.292
r_long_range_B_other7.274
r_dihedral_angle_1_deg5.504
r_scangle_other5.496
r_mcangle_it3.834
r_mcangle_other3.834
r_scbond_it3.542
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.061
r_dihedral_angle_4_deg14.544
r_dihedral_angle_3_deg12.377
r_long_range_B_refined7.292
r_long_range_B_other7.274
r_dihedral_angle_1_deg5.504
r_scangle_other5.496
r_mcangle_it3.834
r_mcangle_other3.834
r_scbond_it3.542
r_scbond_other3.542
r_mcbond_it2.653
r_mcbond_other2.653
r_angle_refined_deg1.299
r_angle_other_deg1.103
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7282
Nucleic Acid Atoms
Solvent Atoms391
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing