7Q2G

mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT726


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2FK7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5285BisTris 50 mM, PEG 3350 4% (w/v), pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.6553.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.06α = 90
b = 57.06β = 90
c = 205.93γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-10-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.93930ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1240.199.90.0910.0990.99611.397.4627352
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1299.91.3391.4370.8147.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2fk7240.1421807119184.070.195620.192610.25382RANDOM71.508
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.830.420.83-2.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.561
r_dihedral_angle_4_deg16.321
r_scangle_other12.991
r_long_range_B_refined12.647
r_long_range_B_other12.64
r_dihedral_angle_3_deg12.1
r_scbond_it11.52
r_scbond_other11.516
r_mcangle_other9.896
r_mcangle_it9.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.561
r_dihedral_angle_4_deg16.321
r_scangle_other12.991
r_long_range_B_refined12.647
r_long_range_B_other12.64
r_dihedral_angle_3_deg12.1
r_scbond_it11.52
r_scbond_other11.516
r_mcangle_other9.896
r_mcangle_it9.88
r_mcbond_other9.86
r_mcbond_it9.859
r_dihedral_angle_1_deg6.337
r_angle_other_deg1.23
r_angle_refined_deg1.226
r_chiral_restr0.051
r_bond_other_d0.009
r_bond_refined_d0.008
r_gen_planes_other0.007
r_gen_planes_refined0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2264
Nucleic Acid Atoms
Solvent Atoms55
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
XSCALEdata scaling