7Q9I

Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7Q0I 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d10.8107
f_angle_d0.5379
f_chiral_restr0.0426
f_plane_restr0.0035
f_bond_d0.0031
Sample
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles89350
Reported Resolution (Å)4.9
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsThe map-to-model resolution, at 0.5 cut off, as determined by phenix is stated in Table S4 of the accompanying publication and was determined as 5.4 A ...The map-to-model resolution, at 0.5 cut off, as determined by phenix is stated in Table S4 of the accompanying publication and was determined as 5.4 Angstroms.
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (7Q0I)
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC
IMAGE ACQUISITIONSerialEM
CTF CORRECTIONcryoSPARC
MODEL FITTINGCoot
INITIAL EULER ASSIGNMENTcryoSPARC
FINAL EULER ASSIGNMENTcryoSPARC
CLASSIFICATIONcryoSPARC
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION