Search Results for "structure motif"
Structure Motif Search
Search and Browse > Advanced Search Structure Motif Search ● Introduction ○ What is a structure motif? ○ When is this search useful? ● Documentation ○ Defining queries using Mol* ○ Defining queries
Sequence Motif Search
Search? The sequence motif search option allows you to query for amino acid or nucleotide sequence fragments in an FASTA sequence that appear frequently in polymers present in 3D structures. Why run a
Structure
structures. The tool also allows you to analyze interactions throughout the structure or in the neighborhood of a single residue or ligand and to explore sequence and structural motifs and features in 3D
Search for Structural Motifs
03/20/2023
Search for Structural Motifs 03/20 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. The Structural Motif service finds structures
Find PDB Structures with Protein Purification Tags
02/11/2014
be used to search for entries with these protein purification tags. To find these structures, select the Sequence Features > Sequence Motif option and enter an exact sequence or a sequence pattern
Advanced Search: Sequence Motif
10/02/2012
data. To look for structures with a particular Sequence Motif, try using one of these techniques with the Sequence Features>Sequence Motif option. A Sequence Motif can be an exact sequence or a sequence
Sequence Motif Searching
06/09/2020
Sequence Motif Searching 06/09 Use Advanced Search to find short sequence patterns in PDB structure FASTA sequences using the following syntax options: Simple: Sequence fragments using IUPAC one
Advanced Search: Sequence Motif
03/30/2010
Advanced Search: Sequence Motif 03/30 The RCSB PDB's Advanced Search lets users build queries of specific types of data. To look for structures with a particular Sequence Motif, try using one of
Search for Structural Motifs
02/16/2021
Search for Structural Motifs 02/16 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. A new Structural Motif service finds structures
Upload Structure Files to Search the PDB
04/11/2023
relevant for AlphaFold2 or ESMfold predictions, homology models, molecular dynamic trajectories, and previously unpublished structures. In the Advanced Search Structure Similarity and Structure Motif
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models
01/12/2025
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models 01/12 In addition to providing support for 3D structure motif searches with user-provided coordinates
Search for Structures By Date
04/25/2023
Searches with other types of searches ( e.g. , Structure Similarity, Structure Motif) using Boolean operators (AND/OR/NOT). Searches can be saved to myPDB and run weekly. User guide documentation is available.
Explore Mechanism and Catalytic Site Annotations
03/31/2024
* ( example ) launch a structure motif search to find these active sites in other experimentally-determined PDB structures and in Computed Structure Models (CSMs; example ) Advanced Search: Structure Motif
Watch: Deep Dive into Computed Structure Model Exploration at RCSB.org
06/19/2025
to find relevant PDB Structures and related Computed Structure Models Group search hits to get non-redundant results Explore sequences in 3D context Align and analyze multiple related 3D structures Search structures by Sequence and 3D Structure similarity Use Structure Motif search
Search for Structural Motifs
Search for Structural Motifs 03/20 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. The Structural Motif service finds structures
Upload Structure Files to Search the PDB
relevant for AlphaFold2 or ESMfold predictions, homology models, molecular dynamic trajectories, and previously unpublished structures. In the Advanced Search Structure Similarity and Structure Motif
Learn: Structural Biology Highlights: CAAX Endoproteases
researchers at MPSBC have recently solved the structure of a central player in this process: the enzyme that cleaves off the AAX motif. They studied the protein Ste24p from yeast, shown here from PDB entry
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models 01/12 In addition to providing support for 3D structure motif searches with user-provided coordinates
Search for Structures By Date
Searches with other types of searches ( e.g. , Structure Similarity, Structure Motif) using Boolean operators (AND/OR/NOT). Searches can be saved to myPDB and run weekly. User guide documentation is available.
Watch: Deep Dive into Computed Structure Model Exploration at RCSB.org
to find relevant PDB Structures and related Computed Structure Models Group search hits to get non-redundant results Explore sequences in 3D context Align and analyze multiple related 3D structures Search structures by Sequence and 3D Structure similarity Use Structure Motif search
Learn: Structural Biology Highlights: Rb Tumor Suppressor and Cancer
should divide or not. NESG researchers have solved the structure of one of these proteins, shown here from PDB entry 2qs9 , identifying the LxCxE motif and also discovering a serine protease active
Learn: Structural Biology Highlights: DNAJA1 and Pancreatic Cancer
crosslink (shown in yellow) between DnaK and the presumed site of interaction on DnaJ, the conserved HPD motif (PDB entry 2qwo ). The structure revealed that DnaJ proteins bind in a location that impacts
Access Computed Structure Model Annotations
, align structures, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive ( AlphaFoldDB or ModelArchive
Access Computed Structure Model Annotations
, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive ( AlphaFoldDB or ModelArchive ). RCSB PDB will
Explore Computed Structure Models Alongside PDB Data
multiple data files, align structures, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive
Structure Motif Search
Search and Browse > Advanced Search Structure Motif Search ● Introduction ○ What is a structure motif? ○ When is this search useful? ● Documentation ○ Defining queries using Mol* ○ Defining queries
PDB-101: Search for Structural Motifs
Search for Structural Motifs 03/20 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. The Structural Motif service finds structures
Search for Structural Motifs
Search for Structural Motifs 03/20 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. The Structural Motif service finds structures
PDB-101: Upload Structure Files to Search the PDB
relevant for AlphaFold2 or ESMfold predictions, homology models, molecular dynamic trajectories, and previously unpublished structures. In the Advanced Search Structure Similarity and Structure Motif
PDB-101: Learn: Structural Biology Highlights: CAAX Endoproteases
researchers at MPSBC have recently solved the structure of a central player in this process: the enzyme that cleaves off the AAX motif. They studied the protein Ste24p from yeast, shown here from PDB entry
Find PDB Structures with Protein Purification Tags
be used to search for entries with these protein purification tags. To find these structures, select the Sequence Features > Sequence Motif option and enter an exact sequence or a sequence pattern
Advanced Search: Sequence Motif
data. To look for structures with a particular Sequence Motif, try using one of these techniques with the Sequence Features>Sequence Motif option. A Sequence Motif can be an exact sequence or a sequence
Sequence Motif Searching
Sequence Motif Searching 06/09 Use Advanced Search to find short sequence patterns in PDB structure FASTA sequences using the following syntax options: Simple: Sequence fragments using IUPAC one
Advanced Search: Sequence Motif
Advanced Search: Sequence Motif 03/30 The RCSB PDB's Advanced Search lets users build queries of specific types of data. To look for structures with a particular Sequence Motif, try using one of
Sequence Motif Search
Search? The sequence motif search option allows you to query for amino acid or nucleotide sequence fragments in an FASTA sequence that appear frequently in polymers present in 3D structures. Why run a
PDB-101: Paper Published: Updated resources for exploring PDB structures and Computed Structure Models
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models 01/12 In addition to providing support for 3D structure motif searches with user-provided coordinates
PDB-101: Search for Structures By Date
Searches with other types of searches ( e.g. , Structure Similarity, Structure Motif) using Boolean operators (AND/OR/NOT). Searches can be saved to myPDB and run weekly. User guide documentation is available.
Search for Structural Motifs
Search for Structural Motifs 02/16 Structural motif similarities between PDB structures can provide valuable functional and evolutionary insights. A new Structural Motif service finds structures
Upload Structure Files to Search the PDB
relevant for AlphaFold2 or ESMfold predictions, homology models, molecular dynamic trajectories, and previously unpublished structures. In the Advanced Search Structure Similarity and Structure Motif
PDB-101: Watch: Deep Dive into Computed Structure Model Exploration at RCSB.org
to find relevant PDB Structures and related Computed Structure Models Group search hits to get non-redundant results Explore sequences in 3D context Align and analyze multiple related 3D structures Search structures by Sequence and 3D Structure similarity Use Structure Motif search
PDB-101: Learn: Structural Biology Highlights: Rb Tumor Suppressor and Cancer
should divide or not. NESG researchers have solved the structure of one of these proteins, shown here from PDB entry 2qs9 , identifying the LxCxE motif and also discovering a serine protease active
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models
Paper Published: Updated resources for exploring PDB structures and Computed Structure Models 01/12 In addition to providing support for 3D structure motif searches with user-provided coordinates
Search for Structures By Date
Searches with other types of searches ( e.g. , Structure Similarity, Structure Motif) using Boolean operators (AND/OR/NOT). Searches can be saved to myPDB and run weekly. User guide documentation is available.
PDB-101: Learn: Structural Biology Highlights: DNAJA1 and Pancreatic Cancer
crosslink (shown in yellow) between DnaK and the presumed site of interaction on DnaJ, the conserved HPD motif (PDB entry 2qwo ). The structure revealed that DnaJ proteins bind in a location that impacts
PDB-101: Access Computed Structure Model Annotations
, align structures, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive ( AlphaFoldDB or ModelArchive
PDB-101: Access Computed Structure Model Annotations
, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive ( AlphaFoldDB or ModelArchive ). RCSB PDB will
PDB-101: Explore Computed Structure Models Alongside PDB Data
multiple data files, align structures, and run Structure Motif Search. Download : From Structure Summary Pages, download the ModelCIF data file hosted by the corresponding external archive
Structure
structures. The tool also allows you to analyze interactions throughout the structure or in the neighborhood of a single residue or ligand and to explore sequence and structural motifs and features in 3D
Explore Mechanism and Catalytic Site Annotations
* ( example ) launch a structure motif search to find these active sites in other experimentally-determined PDB structures and in Computed Structure Models (CSMs; example ) Advanced Search: Structure Motif
Watch: Deep Dive into Computed Structure Model Exploration at RCSB.org
to find relevant PDB Structures and related Computed Structure Models Group search hits to get non-redundant results Explore sequences in 3D context Align and analyze multiple related 3D structures Search structures by Sequence and 3D Structure similarity Use Structure Motif search
