GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1G16 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1G16_GDP_C_203 | 92% | 4% | 0.082 | 0.972 | 2.65 | 2.89 | 9 | 8 | 0 | 0 | 100% | 1 |
1G16_GDP_A_201 | 81% | 5% | 0.104 | 0.957 | 2.49 | 2.88 | 9 | 8 | 0 | 0 | 100% | 1 |
1G16_GDP_D_204 | 69% | 4% | 0.12 | 0.935 | 2.69 | 2.93 | 10 | 9 | 0 | 0 | 100% | 1 |
1G16_GDP_B_202 | 53% | 4% | 0.141 | 0.9 | 2.68 | 2.91 | 10 | 9 | 1 | 0 | 100% | 1 |
4Z8Y_GDP_A_201 | 86% | 39% | 0.091 | 0.959 | 1.05 | 1.31 | 2 | 4 | 0 | 0 | 100% | 1 |
3CPH_GDP_A_302 | 84% | 43% | 0.116 | 0.979 | 1.01 | 1.19 | 1 | 3 | 0 | 0 | 100% | 1 |
4ZDW_GDP_A_201 | 51% | 45% | 0.168 | 0.923 | 0.98 | 1.15 | 1 | 2 | 4 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |