2PHN | pdb_00002phn


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2PHN designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PHN_GDP_A_2696Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PHN_GDP_A_2696Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2PHN_GDP_A_2696Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2PHN_GDP_A_2696 100% 44% 0.046 0.991.08 1.08 1 200100%1
2PHN_GDP_B_2697 99% 46% 0.046 0.9820.98 1.1 2 200100%1
8G8P_GDP_AAA_303 89% 46% 0.086 0.9640.91 1.16 - 300100%0.6
7ULE_GDP_A_301 81% 43% 0.092 0.9420.95 1.24 1 400100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
9BL0_GDP_A_201 100% 46% 0.016 0.9980.96 1.11 1 210100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1