PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 3WQD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3WQD_PLP_B_402 | 92% | 10% | 0.089 | 0.99 | 2.21 | 2.1 | 5 | 5 | 0 | 0 | 94% | 0.9375 |
3WQD_PLP_A_401 | 84% | 8% | 0.11 | 0.983 | 2.72 | 1.86 | 7 | 7 | 3 | 0 | 94% | 0.9375 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
3WQE_PLP_B_401 | 95% | 15% | 0.069 | 0.985 | 2.07 | 1.74 | 5 | 5 | 0 | 0 | 94% | 0.9375 |
4PB3_PLP_A_401 | 95% | 11% | 0.075 | 0.978 | 2.44 | 1.82 | 4 | 6 | 0 | 0 | 100% | 0.9375 |
3WQG_PLP_A_401 | 93% | 7% | 0.086 | 0.982 | 2.75 | 2 | 6 | 6 | 1 | 0 | 100% | 0.9375 |
4PB5_PLP_B_401 | 91% | 10% | 0.09 | 0.988 | 2.38 | 1.94 | 4 | 8 | 0 | 0 | 94% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
1JF9_PLP_A_500 | 100% | 12% | 0.047 | 0.994 | 1.28 | 2.78 | 1 | 11 | 0 | 0 | 100% | 0.9375 |
2BIG_PLP_B_1361 | 100% | 29% | 0.042 | 0.988 | 1.55 | 1.31 | 2 | 3 | 1 | 0 | 100% | 0.9375 |