UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4P00 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4P00_UDP_A_918 | 35% | 34% | 0.231 | 0.921 | 0.95 | 1.65 | 1 | 6 | 1 | 0 | 100% | 1 |
5EJZ_UDP_A_921 | 51% | 30% | 0.184 | 0.94 | 1 | 1.75 | 1 | 5 | 4 | 0 | 100% | 1 |
4HG6_UDP_A_919 | 1% | 35% | 0.7 | 0.788 | 0.97 | 1.58 | 1 | 5 | 1 | 0 | 100% | 0.5 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |