4PC3 | pdb_00004pc3


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 4PC3 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4PC3_GDP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4PC3_GDP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4PC3_GDP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4PC3_GDP_B_401 51% 60% 0.161 0.9160.65 0.86 - -00100%1
4PC3_GDP_A_401 11% 55% 0.319 0.8360.69 1.04 - 100100%0.8
3U6B_GDP_A_402 91% 61% 0.101 0.9870.9 0.62 1 -00100%1
2HCJ_GDP_A_999 88% 53% 0.106 0.9820.94 0.88 2 300100%1
5MI3_GDP_B_402 83% 44% 0.123 0.9821.01 1.14 2 300100%1
4PC2_GDP_B_401 83% 58% 0.115 0.9730.7 0.91 - -00100%1
2HDN_GDP_L_6999 83% 35% 0.12 0.9781.07 1.46 2 700100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1