XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 5UUB designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5UUB_XYP_A_419 | 71% | 22% | 0.093 | 0.913 | 2.11 | 1.14 | 2 | - | 0 | 0 | 100% | 0.837 |
5UUB_XYP_A_416 | 54% | 38% | 0.12 | 0.883 | 1.64 | 0.8 | 3 | - | 0 | 0 | 100% | 0.75 |
5UUB_XYP_A_418 | 2% | 36% | 0.414 | 0.689 | 1.79 | 0.75 | 3 | - | 2 | 0 | 100% | 0.742 |
5UUB_XYP_A_417 | 0% | 26% | 0.532 | 0.558 | 2.02 | 1.01 | 3 | 1 | 0 | 0 | 100% | 0.501 |
6N4W_XYP_A_414 | 69% | 36% | 0.118 | 0.933 | 1.76 | 0.79 | 3 | - | 0 | 0 | 100% | 0.781 |
5UN3_XYP_A_355 | 63% | 28% | 0.108 | 0.901 | 1.98 | 0.94 | 2 | 1 | 1 | 0 | 100% | 0.876 |
6N4Z_XYP_A_413 | 60% | 40% | 0.127 | 0.913 | 1.81 | 0.55 | 3 | - | 0 | 0 | 100% | 0.776 |
5UUA_XYP_A_416 | 59% | 36% | 0.125 | 0.906 | 1.54 | 0.98 | 1 | 1 | 0 | 0 | 100% | 0.86 |
5UU9_XYP_A_409 | 43% | 38% | 0.137 | 0.859 | 1.61 | 0.85 | 1 | 1 | 1 | 0 | 100% | 0.8 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
1FHD_XYP_A_601 | 96% | 72% | 0.042 | 0.97 | 0.68 | 0.41 | - | - | 0 | 0 | 90% | 0.9 |