6DB: octopine
6DB is a Ligand Of Interest in 5VVI designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5VVI_6DB_A_301 | 77% | 27% | 0.123 | 0.963 | 1 | 1.9 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5VVI_6DB_C_301 | 63% | 27% | 0.148 | 0.945 | 1.01 | 1.93 | 1 | 4 | 1 | 0 | 100% | 1 |
| 5VVI_6DB_B_301 | 50% | 22% | 0.16 | 0.91 | 1.1 | 2.13 | 1 | 6 | 0 | 0 | 100% | 1 |
| 5ITP_6DB_A_301 | 86% | 32% | 0.11 | 0.979 | 1.57 | 1.13 | 1 | 1 | 0 | 0 | 100% | 1 |
| 5ORG_6DB_B_313 | 84% | 30% | 0.104 | 0.967 | 1.55 | 1.25 | 2 | 3 | 0 | 0 | 100% | 1 |
| 5ITO_6DB_A_304 | 74% | 33% | 0.14 | 0.972 | 1.53 | 1.14 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5OT8_6DB_A_301 | 71% | 31% | 0.136 | 0.956 | 1.36 | 1.38 | 2 | 5 | 1 | 0 | 100% | 1 |
