XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 6B6O designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6B6O_XYP_A_305 | 4% | 30% | 0.222 | 0.605 | 1.92 | 0.88 | 3 | - | 0 | 0 | 100% | 1 |
6B6P_XYP_A_305 | 55% | 31% | 0.097 | 0.864 | 1.31 | 1.44 | 1 | 3 | 0 | 0 | 100% | 1 |
6AVL_XYP_A_304 | 50% | 43% | 0.109 | 0.856 | 1.54 | 0.68 | 2 | - | 0 | 0 | 100% | 0.81 |
6B6Q_XYP_A_305 | 19% | 32% | 0.251 | 0.847 | 1.56 | 1.16 | 1 | - | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
1FHD_XYP_A_601 | 96% | 72% | 0.042 | 0.97 | 0.68 | 0.41 | - | - | 0 | 0 | 90% | 0.9 |