RCSB PDB - CDI Ligand Summary Page

CDI

2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE

Created: 2001-09-18
Last modified:  2011-06-04

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Chemical Details

Formal Charge0
Atom Count28
Chiral Atom Count4
Bond Count28
Aromatic Bond Count0
2D diagram of CDI

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Chemical Component Summary

Name2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
Systematic Name (OpenEye OEToolkits)(2R,4S,6S,7R)-2,4-dihydroxy-6-(hydroxymethyl)-6-methyl-2,4-dioxo-1,3,5-trioxa-2$l^{5},4$l^{5}-diphosphacyclooctan-7-ol
FormulaC5 H12 O9 P2
Molecular Weight278.091
TypeNON-POLYMER

Chemical Descriptors

TypeProgram Version Descriptor
SMILESACDLabs10.04O=P1(OP(=O)(OCC(O)C(O1)(C)CO)O)O
SMILESCACTVS3.341C[C]1(CO)O[P](O)(=O)O[P](O)(=O)OC[CH]1O
SMILESOpenEye OEToolkits1.5.0CC1(C(COP(=O)(OP(=O)(O1)O)O)O)CO
Canonical SMILESCACTVS3.341 C[C@@]1(CO)O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O
Canonical SMILESOpenEye OEToolkits1.5.0 C[C@@]1([C@@H](CO[P@](=O)(O[P@](=O)(O1)O)O)O)CO
InChIInChI1.03 InChI=1S/C5H12O9P2/c1-5(3-6)4(7)2-12-15(8,9)14-16(10,11)13-5/h4,6-7H,2-3H2,1H3,(H,8,9)(H,10,11)/t4-,5+/m1/s1
InChIKeyInChI1.03 SFRQRNJMIIUYDI-UHNVWZDZSA-N

Drug Info: DrugBank

DrugBank IDDB03961 
Name2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Groups experimental
Synonyms2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate

Drug Targets

NameTarget SequencePharmacological ActionActions
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLG...unknown
Drug Info/Drug Targets: DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Nucleic Acids Res. 2011 Jan; 39 (Database issue):D1035-41. | PMID:21059682

Related Resource References

Resource NameReference
PubChem 126747
ChEBI CHEBI:18425