RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Enterococcus faecium"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 2,956 Structures.

Refinements

Structure Determination Methodology

	computational (2,855)
	experimental (101)

CSM Source Database

AlphaFoldDB (2,855)

pLDDT Global Quality Score

	< 50.0 (11)
	50.0 - 70.0 (123)
	70.0 - 90.0 (1,045)
	> 90.0 (1,676)

Scientific Name of Source Organism

	Enterococcus faecium (2,939)
	Enterococcus faecium DO (10)
	Enterococcus faecium Aus0004 (2)
	Enterococcus faecium 1,231,410 (1)
	Enterococcus faecium EnGen0025 (1)
	Enterococcus faecium EnGen0026 (1)
	Enterococcus faecium SD3B-2 (1)
	Enterococcus faecium TX0133a04 (1)

Taxonomy

Bacteria (2,956)

Experimental Method

	X-RAY DIFFRACTION (95)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (2,956)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (21)
	2.0 - 2.5 (21)
	2.5 - 3.0 (38)
	3.0 - 3.5 (10)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (11)
	2005 - 2009 (18)
	2010 - 2014 (6)
	2015 - 2019 (21)
	2020 - 2024 (2,897)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (236)
	Hydrolases (127)
	Isomerases (72)
	Oxidoreductases (66)
	Ligases (57)
	Lyases (40)
	Translocases (10)

Symmetry Type

	Asymmetric (2,885)
	Cyclic (46)
	Dihedral (4)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a+b) (11)
	Alpha and beta proteins (a/b) (5)
	Artifacts (4)
	All alpha proteins (4)

AllSelected

1 to 25 of 2,956 Structures

Page 1 of 119

Sort by

Explore in 3D

1B7B \| pdb_00001b7b	Download File View File

Carbamate kinase from Enterococcus faecalis

Marina, A., Alzari, P.M., Bravo, J., Uriarte, M., Barcelona, B., Fita, I., Rubio, V.

(1999) Protein Sci 8: 934-940

Released	2000-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	CARBAMATE KINASE (protein)
Unique Ligands	SO4

Explore in 3D

1B87 \| pdb_00001b87	Download File View File

CRYSTAL STRUCTURE OF AN AMINOGLYCOSIDE 6'-N-ACETYLTRANSFERASE

Wybenga-Groot, L.E., Berghuis, A.M.

(1999) Structure 7: 497-507

Released	1999-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	PROTEIN (AMINOGLYCOSIDE N6'-ACETYLTRANSFERASE TYPE 1) (protein)
Unique Ligands	ACO

Explore in 3D

1E4E \| pdb_00001e4e	Download File View File

D-alanyl-D-lacate ligase

Roper, D.I.

(2000) Proc Natl Acad Sci U S A 97: 8921-8925

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecium
Macromolecule	VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (protein)
Unique Ligands	ADP, GOL, MG, PHY, SO4

Explore in 3D

1KHR \| pdb_00001khr	Download File View File

Crystal Structure of Vat(D) in Complex with Virginiamycin and Coenzyme A

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	COA, VIR

Explore in 3D

1KK4 \| pdb_00001kk4	Download File View File

Crystal Structure of Vat(D) in Complex with Acetyl-CoA

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	ACO

Explore in 3D

1KK5 \| pdb_00001kk5	Download File View File

Crystal Structure of Vat(D) (Form II)

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)

Explore in 3D

1KK6 \| pdb_00001kk6	Download File View File

Crystal Structure of Vat(D) (Form I)

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)

Explore in 3D

1MR7 \| pdb_00001mr7	Download File View File

Crystal Structure of Streptogramin A Acetyltransferase

Kehoe, L.E., Snidwongse, J., Courvalin, P., Rafferty, J.B., Murray, I.A.

(2003) J Biological Chem 278: 29963-29970

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A Acetyltransferase (protein)

Explore in 3D

1MR9 \| pdb_00001mr9	Download File View File

Crystal structure of Streptogramin A Acetyltransferase with acetyl-CoA bound

Kehoe, L.E., Snidwongse, J., Courvalin, P., Rafferty, J.B., Murray, I.A.

(2003) J Biological Chem 278: 29963-29970

Released	2003-08-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A Acetyltransferase (protein)
Unique Ligands	ACO

Explore in 3D

1MRL \| pdb_00001mrl	Download File View File

Crystal structure of streptogramin A acetyltransferase with dalfopristin

Kehoe, L.E., Snidwongse, J., Courvalin, P., Rafferty, J.B., Murray, I.A.

(2003) J Biological Chem 278: 29963-29970

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A acetyltransferase (protein)
Unique Ligands	DOL

Explore in 3D

1N71 \| pdb_00001n71	Download File View File

Crystal structure of aminoglycoside 6'-acetyltransferase type Ii in complex with coenzyme A

Burk, D.L., Ghuman, N., Wybenga-Groot, L.E., Berghuis, A.M.

(2003) Protein Sci 12: 426-437

Released	2003-03-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	aac(6')-Ii (protein)
Unique Ligands	COA, SO4

Explore in 3D

1R44 \| pdb_00001r44	Download File View File

Crystal Structure of VanX

Pratt, S.D., Katz, L., Severin, J.M., Holzman, T., Park, C.H.

(1998) Mol Cell 2: 75-84

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Enterococcus faecium
Macromolecule	D-alanyl-D-alanine dipeptidase (protein)
Unique Ligands	ZN

Explore in 3D

1ZAT \| pdb_00001zat	Download File View File

Crystal Structure of an Enterococcus faecium peptidoglycan binding protein at 2.4 A resolution

Biarrotte-Sorin, S., Hugonnet, J.-E., Mainardi, J.-L., Gutmann, L., Rice, L., Arthur, M., Mayer, C.

(2006) J Mol Biology 359: 533-538

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecium
Macromolecule	L,D-transpeptidase (protein)
Unique Ligands	SO4, ZN

Explore in 3D

2A4N \| pdb_00002a4n	Download File View File

Crystal structure of aminoglycoside 6'-N-acetyltransferase complexed with coenzyme A

Burk, D.L., Xiong, B., Breitbach, C., Berghuis, A.M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1273-1279

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecium
Macromolecule	aac(6')-Ii (protein)
Unique Ligands	COA, SO4

Explore in 3D

2BL7 \| pdb_00002bl7	Download File View File

1.6 Angstrom crystal structure of EntA-im: a bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin, enterocin A

Johnsen, L., Dalhus, B., Leiros, I., Nissen-Meyer, J.

(2005) J Biological Chem 280: 19045

Released	2005-03-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecium
Macromolecule	ENTEROCINE A IMMUNITY PROTEIN (protein)

Explore in 3D

2BL8 \| pdb_00002bl8	Download File View File

1.6 Angstrom crystal structure of EntA-im: a bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin, enterocin A

Johnsen, L., Dalhus, B., Leiros, I., Nissen-Meyer, J.

(2005) J Biological Chem 280: 19045

Released	2005-03-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Enterococcus faecium
Macromolecule	ENTEROCINE A IMMUNITY PROTEIN (protein)
Unique Ligands	FLC

Explore in 3D

2HKL \| pdb_00002hkl	Download File View File

Crystal structure of Enterococcus faecium L,D-transpeptidase C442S mutant

Delfosse, V., Hugonnet, J.-E., Magnet, S., Mainardi, J.-L., Arthur, M., Mayer, C.

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Enterococcus faecium
Macromolecule	L,D-TRANSPEPTIDASE (protein)
Unique Ligands	SO4

Explore in 3D

2JFU \| pdb_00002jfu	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with phosphate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	PO4

Explore in 3D

2JFV \| pdb_00002jfv	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with citrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	FLC

Explore in 3D

2JFW \| pdb_00002jfw	Download File View File

Crystal structure of Enterococcus faecium glutamate racemase in complex with tartrate

Lundqvist, T.

(2007) Nature 447: 817

Released	2007-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecium
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	TLA

Explore in 3D

2N4K \| pdb_00002n4k	Download File View File

Solution Structure of Enterocin HF, an Antilisterial Bacteriocin Produced by Enterococcus faecium M3K31

Arbulu, S., Lohans, C.T., van Belkum, M.J., Cintas, L.M., Herranz, C., Vederas, J.C., Hernandez, P.E.

(2015) J Agric Food Chem 63: 10689-10695

Released	2015-12-02
Method	SOLUTION NMR
Organisms	Enterococcus faecium
Macromolecule	Enterocin-HF (protein)

Explore in 3D

2QR4 \| pdb_00002qr4	Download File View File

Crystal structure of oligoendopeptidase-F from Enterococcus faecium

Ramagopal, U.A., Toro, R., Meyer, A.J., Freeman, J., Bain, K., Rodgers, L., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecium DO
Macromolecule	Peptidase M3B, oligoendopeptidase F (protein)

Explore in 3D

2QW6 \| pdb_00002qw6	Download File View File

Crystal structure of the C-terminal domain of an AAA ATPase from Enterococcus faecium DO

Bonanno, J.B., Rutter, M., Bain, K.T., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterococcus faecium DO
Macromolecule	AAA ATPase, central region (protein)

Explore in 3D

2R9G \| pdb_00002r9g	Download File View File

Crystal structure of the C-terminal fragment of AAA ATPase from Enterococcus faecium

Ramagopal, U.A., Patskovsky, Y., Bonanno, J.B., Shi, W., Toro, R., Meyer, A.J., Rutter, M., Wu, B., Groshong, C., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Enterococcus faecium DO
Macromolecule	AAA ATPase, central region (protein)
Unique Ligands	ACT, GOL