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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Berkeley Structural Genomics Center (BSGC)"

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Search Summary

This query matches 102 Structures.

Refinements

Structure Determination Methodology

experimental (102)

Scientific Name of Source Organism

	Methanocaldococcus jannaschii (18)
	Thermotoga maritima (16)
	Mycoplasmoides pneumoniae (13)
	Homo sapiens (8)
	Aquifex aeolicus (7)
	Escherichia coli (5)
	Archaeoglobus fulgidus (4)
	Deinococcus radiodurans (4)
	Mycoplasmoides genitalium (3)
	Pyrococcus horikoshii (3)

More...

Taxonomy

	Bacteria (61)
	Archaea (32)
	Eukaryota (8)

Experimental Method

	X-RAY DIFFRACTION (93)
	SOLUTION NMR (9)

Polymer Entity Type

Protein (102)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (19)
	2.0 - 2.5 (37)
	2.5 - 3.0 (31)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (66)
	2005 - 2009 (26)
	2010 - 2014 (7)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (24)
	Ligases (8)
	Oxidoreductases (3)
	Isomerases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (58)
	Cyclic (38)
	Dihedral (22)
	Helical (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (43)
	Alpha and beta proteins (a+b) (28)
	All beta proteins (15)
	Artifacts (11)
	All alpha proteins (11)
	Multi-domain proteins (alpha and beta) (7)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 102 Structures

Page 1 of 5

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1DUS \| pdb_00001dus	Download File View File

MJ0882-A hypothetical protein from M. jannaschii

Hung, L., Huang, L., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 121-127

Released	2000-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ0882 (protein)

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1EKE \| pdb_00001eke	Download File View File

CRYSTAL STRUCTURE OF CLASS II RIBONUCLEASE H (RNASE HII) WITH MES LIGAND

Lai, L.H., Yokota, H., Hung, L.W., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) Structure 8: 897-904

Released	2000-09-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	RIBONUCLEASE HII (protein)
Unique Ligands	MES

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1F5S \| pdb_00001f5s	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2001) Structure 9: 65-72

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (PSP) (protein)
Unique Ligands	MG, PO4

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1FBN \| pdb_00001fbn	Download File View File

CRYSTAL STRUCTURE OF A FIBRILLARIN HOMOLOGUE FROM METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.6 A

Wang, H., Boisvert, D., Kim, K.K., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) EMBO J 19: 317-323

Released	2000-04-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ FIBRILLARIN HOMOLOGUE (protein)

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1FO5 \| pdb_00001fo5	Download File View File

SOLUTION STRUCTURE OF REDUCED MJ0307

Cave, J.W., Cho, H.S., Batchelder, A.M., Kim, R., Yokota, H., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)

(2001) Protein Sci 10: 384-396

Released	2001-04-11
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii
Macromolecule	THIOREDOXIN (protein)

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1G2I \| pdb_00001g2i	Download File View File

CRYSTAL STRUCTURE OF A NOVEL INTRACELLULAR PROTEASE FROM PYROCOCCUS HORIKOSHII AT 2 A RESOLUTION

Du, X., Choi, I.-G., Kim, R., Jancarik, J., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2000) Proc Natl Acad Sci U S A 97: 14079-14084

Released	2000-11-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	PROTEASE I (protein)
Unique Ligands	SO4

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1G8A \| pdb_00001g8a	Download File View File

PYROCOCCUS HORIKOSHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)

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1ILW \| pdb_00001ilw	Download File View File

Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii

Du, X., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2001) Biochemistry 40: 14166-14172

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pyrococcus horikoshii
Macromolecule	180 aa long hypothetical Pyrazinamidase/nicotinamidase (protein)

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1J97 \| pdb_00001j97	Download File View File

Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase

Cho, H., Wang, W., Kim, R., Yokota, H., Damo, S., Kim, S.-H., Wemmer, D., Kustu, S., Yan, D., Berkeley Structural Genomics Center (BSGC)

(2001) Proc Natl Acad Sci U S A 98: 8525-8530

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Phosphoserine Phosphatase (protein)
Unique Ligands	MG, PO4

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1JEO \| pdb_00001jeo	Download File View File

Crystal Structure of the Hypothetical Protein MJ1247 from Methanococcus jannaschii at 2.0 A Resolution Infers a Molecular Function of 3-Hexulose-6-Phosphate isomerase.

Martinez-Cruz, L.A., Dreyer, M.K., Boisvert, D.C., Yokota, H., Martinez-Chantar, M.L., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) Structure 10: 195-204

Released	2002-02-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HYPOTHETICAL PROTEIN MJ1247 (protein)
Unique Ligands	CIT

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1JX7 \| pdb_00001jx7	Download File View File

Crystal structure of ychN protein from E.coli

Shin, D.H., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 53-66

Released	2002-09-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL PROTEIN YCHN (protein)

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1L2F \| pdb_00001l2f	Download File View File

Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain

Shin, D.H., Nguyen, H.H., Jancarik, J., Yokota, H., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2003) Biochemistry 42: 13429-13437

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	N utilization substance protein A (protein)

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1L7M \| pdb_00001l7m	Download File View File

HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX)

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Phosphoserine Phosphatase (protein)
Unique Ligands	MG, PO4

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1L7N \| pdb_00001l7n	Download File View File

TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX)

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	AF3, ALF, MG, SO4

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1L7O \| pdb_00001l7o	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	ACY, ZN

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1L7P \| pdb_00001l7p	Download File View File

SUBSTRATE BOUND PHOSPHOSERINE PHOSPHATASE COMPLEX STRUCTURE

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	PO4, SEP

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1LFP \| pdb_00001lfp	Download File View File

Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus

Shin, D.H., Yokota, H., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) Proc Natl Acad Sci U S A 99: 7980-7985

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein AQ_1575 (protein)

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1LQL \| pdb_00001lql	Download File View File

Crystal structure of OsmC like protein from Mycoplasma pneumoniae

Choi, I.-G., Shin, D.H., Brandsen, J., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2003) J Struct Funct Genomics 4: 31-34

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	osmotical inducible protein C like family (protein)

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1MGP \| pdb_00001mgp	Download File View File

Hypothetical protein TM841 from Thermotoga maritima reveals fatty acid binding function

Schulze-Gahmen, U., Pelaschier, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2003) Proteins 50: 526-530

Released	2002-09-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Hypothetical protein TM841 (protein)
Unique Ligands	PLM

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1MJH \| pdb_00001mjh	Download File View File

Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics

Zarembinski, T.I., Hung, L.-W., Mueller-Dieckmann, H.J., Kim, K.-K., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(1998) Proc Natl Acad Sci U S A 95: 15189-15193

Released	1998-12-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PROTEIN (ATP-BINDING DOMAIN OF PROTEIN MJ0577) (protein)
Unique Ligands	ATP, MN

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1MRZ \| pdb_00001mrz	Download File View File

Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2003) Proteins 52: 633-635

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Riboflavin kinase/FMN adenylyltransferase (protein)
Unique Ligands	CIT