RCSB PDB: Search

4D7Z	Download File View File

E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms

Bravo, J.P.K., Monteiro, D.C.F., Webb, M.E., Pearson, A.R.

To be published

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN (protein) ASPARTATE 1-DECARBOXYLASE BETA CHAIN (protein)
Unique Ligands	PEG, SCN

7JHY	Download File View File

Type IV-B CRISPR Complex

(2021) iScience 24: 102201-102201

Released	2021-03-31
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Mycobacterium sp. JS623
Macromolecule	Csf2 (Cas7) (protein) Csf4 (Cas11) (protein) RNA (31-MER) (nucleic acid)

7KHA	Download File View File

Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade

O'Brien, R., Wrapp, D., Bravo, J.P.K., Schwartz, E., Taylor, D.

(2020) Nat Commun 11: 5931-5931

Released	2020-11-11
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	CRISPR-associated protein, CT1133 family (protein) CRISPR-associated protein, CT1134 family (protein) CRISPR-associated protein, TM1801 family (protein) RNA (45-MER) (nucleic acid)

7L1F	Download File View File

SARS-CoV-2 RdRp in complex with 4 Remdesivir monophosphate

(2021) Mol Cell 81: 1548-1552.e4

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.89 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 7 (protein) Non-structural protein 8 (protein) RNA-directed RNA polymerase (protein) RNA (5'-R(PAPUPUPUPUPAPAPUPAPGPCPUPUPCPUPUPAPG)-3') (nucleic acid) RNA (5'-R(PCPUPAPAPGPAPAPGPCPUPAPUPU(F86)(F86)(F86)*(F86))-3') (nucleic acid)

Bravo, J.P.K., Borodavka, A.

7PKO	Download File View File

CryoEM structure of Rotavirus NSP2

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-29
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Rotavirus A
Macromolecule	Non-structural protein 2 (protein)

Bravo, J.P.K., Borodavka, A.

7PKP	Download File View File

NSP2 RNP complex

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-29
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Rotavirus A
Macromolecule	Non-structural protein 2 (protein)

7S4U	Download File View File

Cryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-point

Bravo, J.P.K., Taylor, D.W., Liu, M.S., Johnson, K.A.

(2022) Nature 603: 343-347

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.56 Å
Organisms	Streptococcus pyogenes synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) Non-target strand (nucleic acid) Target strand (nucleic acid) gRNA (nucleic acid)

7S4V	Download File View File

Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation

Bravo, J.P.K., Taylor, D.W., Liu, M.S., Johnson, K.A.

(2022) Nature 603: 343-347

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Streptococcus pyogenes synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)

7S4X	Download File View File

Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation

Bravo, J.P.K., Taylor, D.W., Liu, M.S., Johnson, K.A.

(2022) Nature 603: 343-347

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.76 Å
Organisms	Streptococcus pyogenes synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)
Unique Ligands	MG

Bravo, J.P.K., Taylor, D.W., Brouns, S.J.J., Aparicio-Maldonado, C.

7S9V	Download File View File

DrmAB:ADP

(2022) Nat Commun 13: 2987-2987

Released	2022-06-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Serratia
Macromolecule	DrmA (protein) DrmB (protein)
Unique Ligands	ADP

Bravo, J.P.K., Taylor, D.W., Brounds, S.J.J., Aparicio-Maldonado, C.

7S9W	Download File View File

Structure of DrmAB:ADP:DNA complex

(2022) Nat Commun 13: 2987-2987

Released	2022-06-15
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Serratia synthetic construct
Macromolecule	DrmA (protein) DrmB (protein) DNA (5'-D(PTPTPTPTPTPTP*T)-3') (nucleic acid)
Unique Ligands	ADP

7UG6	Download File View File

Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922

Yelland, J.N., Bravo, J.P.K., Black, J.J.B., Taylor, D.W., Johnson, A.W.

(2023) Nat Struct Mol Biol 30: 91-98

Released	2022-12-21
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 3
Unique Ligands	GDP, MG

8D49	Download File View File

Structure of Cas12a2 binary complex

(2023) Nature 613: 582-587

Released	2023-01-18
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Sulfuricurvum sp. PC08-66 synthetic construct
Macromolecule	OrfB_Zn_ribbon domain-containing protein (protein) RNA (26-MER) (nucleic acid)

8D4A	Download File View File

Cas12a2 quaternary complex

(2023) Nature 613: 582-587

Released	2023-01-18
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Sulfuricurvum sp. PC08-66 synthetic construct
Macromolecule	OrfB_Zn_ribbon domain-containing protein (protein) DNA (5'-D(PAPAPAPAPAPAPAPAPAPAPA)-3') (nucleic acid) DNA (5'-D(PTPTPTPTPTPTPTPTPTPTPT)-3') (nucleic acid) RNA (28-MER) (nucleic acid) RNA (41-MER) (nucleic acid)
Unique Ligands	MG, ZN

8D4B	Download File View File

Structure of Cas12a2 ternary complex

(2023) Nature 613: 582-587

Released	2023-01-18
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Sulfuricurvum sp. PC08-66 synthetic construct
Macromolecule	OrfB_Zn_ribbon domain-containing protein (protein) RNA (28-MER) (nucleic acid) RNA (41-MER) (nucleic acid)

8DEJ	Download File View File

D. vulgaris type I-C Cascade bound to dsDNA target

O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.

(2023) Mol Cell 83: 746

Released	2023-02-22
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2 Unique nucleic acid hybrid chains: 1

8DEX	Download File View File

type I-C Cascade

O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.

(2023) Mol Cell 83: 746

Released	2023-02-15
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	CRISPR-associated protein, CT1133 family (protein) CRISPR-associated protein, TM1801 family (protein) pre-crRNA processing endonuclease (protein) RNA (48-MER) (nucleic acid)

8DFA	Download File View File

type I-C Cascade bound to ssDNA target

O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.

(2023) Mol Cell 83: 746

Released	2023-02-22
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Nitratidesulfovibrio vulgaris Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 1 Unique nucleic acid hybrid chains: 1

8DFO	Download File View File

type I-C Cascade bound to AcrIC4

O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.

(2023) Mol Cell 83: 746

Released	2023-02-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough Pseudomonas aeruginosa phage DMS3mVir
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

8DFS	Download File View File

type I-C Cascade bound to AcrIF2

O'Brien, R.E., Bravo, J.P.K., Ramos, D., Hibshman, G.N., Wright, J.T., Taylor, D.W.

(2023) Mol Cell 83: 746

Released	2023-02-22
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Casadabanvirus D3112 Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1

8SPQ	Download File View File

SpRY-Cas9:gRNA complex targeting TGG PAM DNA

(2024) Nat Commun 15: 3663-3663

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Escherichia phage Lambda Streptococcus pyogenes Streptococcus pyogenes serotype M1
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)
Unique Ligands	MG

8SQH	Download File View File

SpRY-Cas9:gRNA complex targeting TTC PAM DNA

(2024) Nat Commun 15: 3663-3663

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.69 Å
Organisms	Escherichia phage Lambda Streptococcus pyogenes
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)
Unique Ligands	MG

8SRS	Download File View File

SpRY-Cas9:gRNA complex targeting TAC PAM DNA

(2024) Nat Commun 15: 3663-3663

Released	2024-05-01
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Escherichia phage Lambda Streptococcus pyogenes
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)
Unique Ligands	MG

8T6O	Download File View File

SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop

(2024) Nat Commun 15: 3663-3663

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia phage Lambda Streptococcus pyogenes
Macromolecule	CRISPR-associated endonuclease Cas9/Csn1 (protein) NTS (nucleic acid) TS (nucleic acid) gRNA (nucleic acid)

8T6P	Download File View File

SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop