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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dong, A."

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Search Summary

This query matches 414 Structures.

Refinements

Structure Determination Methodology

experimental (414)

Scientific Name of Source Organism

	Homo sapiens (293)
	synthetic construct (13)
	Plasmodium falciparum 3D7 (12)
	Cryptosporidium parvum (9)
	Cryptosporidium parvum Iowa II (8)
	Pseudomonas aeruginosa (7)
	Plasmodium vivax (6)
	Plasmodium yoelii (6)
	Saccharomyces cerevisiae (5)
	Agrobacterium fabrum str. C58 (4)

More...

Taxonomy

	Eukaryota (372)
	Bacteria (34)
	other sequences (13)
	Archaea (4)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (414)

Polymer Entity Type

	Protein (414)
	DNA (13)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (188)
	2.0 - 2.5 (163)
	2.5 - 3.0 (38)
	3.0 - 3.5 (6)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (101)
	2010 - 2014 (100)
	2015 - 2019 (100)
	2020 - 2024 (98)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (174)
	Hydrolases (55)
	Ligases (21)
	Oxidoreductases (11)
	Isomerases (5)
	Lyases (5)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (275)
	Cyclic (145)
	Dihedral (19)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (74)
	All beta proteins (46)
	Artifacts (33)
	Alpha and beta proteins (a+b) (25)
	All alpha proteins (19)
	Small proteins (4)
	Membrane and cell surface proteins and peptides (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 414 Structures

Page 1 of 17

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1FJX \| pdb_00001fjx	Download File View File

STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY

Vilkaitis, G., Dong, A., Weinhold, E., Cheng, X., Klimasauskas, S.

(2000) J Biological Chem 275: 38722-38730

Released	2000-12-15
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Haemophilus haemolyticus
Macromolecule	HHAI DNA METHYLTRANSFERASE (protein) DNA (5'-D(TPGPAPTPAPGPCPGPCPTPAPTP*C)-3') (nucleic acid)
Unique Ligands	SAH, SO4

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1G55 \| pdb_00001g55	Download File View File

Structure of human DNMT2, an enigmatic DNA methyltransferase homologue

Dong, A., Yoder, J.A., Zhang, X., Zhou, L., Bestor, T.H., Cheng, X.

(2001) Nucleic Acids Res 29: 439-448

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA CYTOSINE METHYLTRANSFERASE DNMT2 (protein)
Unique Ligands	BME, GOL, SAH, SO4

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1J70 \| pdb_00001j70	Download File View File

CRYSTAL STRUCTURE OF YEAST ATP SULFURYLASE

Lalor, D.J., Schnyder, T., Saridakis, V., Pilloff, D.E., Dong, A., Tang, H., Leyh, T.S., Pai, E.F.

(2003) Protein Eng 16: 1071-1079

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP SULPHURYLASE (protein)
Unique Ligands	NA, PO4

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1LVW \| pdb_00001lvw	Download File View File

Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP

Dong, A., Christendat, D., Pai, E.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	glucose-1-phosphate thymidylyltransferase (protein)
Unique Ligands	CL, GOL, SO4, TYD

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1Q0S \| pdb_00001q0s	Download File View File

Binary Structure of T4DAM with AdoHcy

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein)
Unique Ligands	SAH

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1Q0T \| pdb_00001q0t	Download File View File

Ternary Structure of T4DAM with AdoHcy and DNA

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(APCPAPGPGPAPTPCPCPTPGPT)-3' (nucleic acid)
Unique Ligands	IOD, SAH

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1R6X \| pdb_00001r6x	Download File View File

The Crystal Structure of a Truncated Form of Yeast ATP Sulfurylase, Lacking the C-Terminal APS Kinase-like Domain, in complex with Sulfate

Lalor, D.J., Schnyder, T., Saridakis, V., Pilloff, D.E., Dong, A., Tang, H., Leyh, T.S., Pai, E.F.

(2003) Protein Eng 16: 1071-1079

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP:sulfate adenylyltransferase (protein)
Unique Ligands	CO, SO4

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1SVU \| pdb_00001svu	Download File View File

Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions

Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J., Cheng, X.

(2004) Biol Chem 385: 373-379

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Haemophilus haemolyticus
Macromolecule	Modification methylase HhaI (protein)
Unique Ligands	SAH, SO4, UNX

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1T1J \| pdb_00001t1j	Download File View File

Crystal structure of genomics APC5043

Dong, A., Xu, X., Liu, Y., Zhang, R., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	hypothetical protein (protein)

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1YNB \| pdb_00001ynb	Download File View File

crystal structure of genomics APC5600

Dong, A., Skarina, T., Savchenko, A., Pai, E.F., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	hypothetical protein AF1432 (protein)

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1YOC \| pdb_00001yoc	Download File View File

Crystal Structure of genomics APC5556

Dong, A., Evdokimova, E., Kudritskam, M., Zhang, R.G., Yakunin, A., Pai, E., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA1835 (protein)
Unique Ligands	GOL

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1YQE \| pdb_00001yqe	Download File View File

Crystal Structure of Conserved Protein of Unknown Function AF0625

Liu, Y., Skarina, T., Dong, A., Kudritskam, M., Savchenko, A., Pai, E.F., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Hypothetical UPF0204 protein AF0625 (protein)
Unique Ligands	POP

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1YXO \| pdb_00001yxo	Download File View File

Crystal Structure of pyridoxal phosphate biosynthetic protein PdxA PA0593

Liu, Y., Xu, X., Dong, A., Kudritskam, M., Savchenko, A., Pai, E.F., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	4-hydroxythreonine-4-phosphate dehydrogenase 1 (protein)
Unique Ligands	EOH, MG

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1Z4R \| pdb_00001z4r	Download File View File

Human GCN5 Acetyltransferase

Dong, A., Bernstein, G., Schuetz, A., Antoshenko, T., Wu, H., Loppnau, P., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Plotnikov, A., Structural Genomics Consortium (SGC)

(2007) Proteins 68: 403-407

Released	2005-03-29
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	General control of amino acid synthesis protein 5-like 2 (protein)
Unique Ligands	ACO

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1ZD1 \| pdb_00001zd1	Download File View File

Human Sulfortransferase SULT4A1

Dong, A., Dombrovski, L., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Sundstrom, M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

(2007) PLoS Biol 5: e97-e97

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Sulfotransferase 4A1 (protein)
Unique Ligands	GOL

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1ZIV \| pdb_00001ziv	Download File View File

Catalytic Domain of Human Calpain-9

Walker, J.R., Davis, T., Newman, E.M., Mackenzie, F., Dong, A., Choe, J., Arrowsmith, C., Sundstrom, M., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2007) J Mol Biology 366: 216-229

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Calpain 9 (protein)
Unique Ligands	BME, CA

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1ZK7 \| pdb_00001zk7	Download File View File

Crystal Structure of Tn501 MerA

Dong, A., Ledwidge, R., Patel, B., Fiedler, D., Falkowski, M., Zelikova, J., Summers, A.O., Pai, E.F., Miller, S.M.

(2005) Biochemistry 44: 11402-11416

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Mercuric reductase (protein)
Unique Ligands	FAD, GOL, SO4

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1ZQ9 \| pdb_00001zq9	Download File View File

Crystal structure of human Dimethyladenosine transferase

Dong, A., Wu, H., Zeng, H., Loppnau, P., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Plotnikov, A., Structural Genomics Consortium (SGC)

To be published

Released	2005-05-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Probable dimethyladenosine transferase (protein)
Unique Ligands	SAM

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1ZRH \| pdb_00001zrh	Download File View File

Crystal structure of Human heparan sulfate glucosamine 3-O-sulfotransferase 1 in complex with PAP

Dong, A., Dombrovski, L., Loppnau, P., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

To be published

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heparan sulfate glucosamine 3-O-sulfotransferase 1 (protein)
Unique Ligands	A3P