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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "El Omari, K."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Trametes ochracea (14)
	Thermothelomyces myriococcoides (4)
	Lama glama (3)
	Pyrococcus furiosus DSM 3638 (3)
	Apis mellifera (2)
	Pyrobaculum calidifontis JCM 11548 (2)
	Canis lupus familiaris (1)
	Homo sapiens (1)
	Neurospora crassa (1)
	Neurospora crassa OR74A (1)

Taxonomy

	Eukaryota (24)
	Archaea (5)

Experimental Method

	X-RAY DIFFRACTION (28)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (9)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (14)
	2015 - 2019 (9)
	2020 - 2024 (5)

Enzyme Classification Name

	Oxidoreductases (15)
	Transferases (3)
	Hydrolases (2)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)

Symmetry Type

	Asymmetric (15)
	Dihedral (14)
	Cyclic (2)

SCOP Classification

	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 29 Structures

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1ZYI \| pdb_00001zyi	Download File View File

Solution structure of ICLN, a multifunctional protein involved in regulatory mechanisms as different as cell volume regulation and rna splicing

Fuerst, J., Schedlbauer, A., Gandini, R., Garavaglia, M.L., Siano, S., Gschwentner, M., Sarg, B., Kontaxis, G., Konrat, R., Paulmichl, M.

(2005) J Biological Chem 280: 31276-31282

Released	2005-06-28
Method	SOLUTION NMR
Organisms	Canis lupus familiaris
Macromolecule	Methylosome subunit pICln (protein)

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4MOE \| pdb_00004moe	Download File View File

Pyranose 2-oxidase H450G mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, FDA, G3F, MES

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4MOF \| pdb_00004mof	Download File View File

Pyranose 2-oxidase H450G mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G2F

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4MOG \| pdb_00004mog	Download File View File

Pyranose 2-oxidase V546C mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G3F

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4MOH \| pdb_00004moh	Download File View File

Pyranose 2-oxidase V546C mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, MES, SHG

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4MOI \| pdb_00004moi	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G3F

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4MOJ \| pdb_00004moj	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	1PE, FDA, G2F, MES

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4MOK \| pdb_00004mok	Download File View File

Pyranose 2-oxidase H167A mutant soaked with 3-fluorinated galactose (not bound)

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, FAD, MES

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4MOL \| pdb_00004mol	Download File View File

Pyranose 2-oxidase H167A mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, 2FG, FAD, MES

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4MOM \| pdb_00004mom	Download File View File

Pyranose 2-oxidase H450G mutant with 3-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	1PE, 2H5, FDA, MES

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4MOO \| pdb_00004moo	Download File View File

Pyranose 2-oxidase H450G mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, GAF

Explore in 3D

4MOP \| pdb_00004mop	Download File View File

Pyranose 2-oxidase V546C mutant with 3-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, 2H5, FDA, MES

Explore in 3D

4MOQ \| pdb_00004moq	Download File View File

Pyranose 2-oxidase V546C mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	2FG, FDA, MES

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4MOR \| pdb_00004mor	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 3-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, 2H5, FDA, MES

Explore in 3D

4MOS \| pdb_00004mos	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	2FG, FDA, GAF, MES

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4QI3 \| pdb_00004qi3	Download File View File

Cytochrome domain of Myriococcum thermophilum cellobiose dehydrogenase, MtCYT

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermothelomyces myriococcoides
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	HEM, MAN, MG, NAG

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4QI4 \| pdb_00004qi4	Download File View File

Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase, MtDH

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermothelomyces myriococcoides
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	CD, FAD, NAG
Unique branched monosaccharides	NAG

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4QI5 \| pdb_00004qi5	Download File View File

Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase with bound cellobionolactam, MtDH

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermothelomyces myriococcoides
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	ABL, CD, FAD
Unique branched monosaccharides	NAG

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4QI6 \| pdb_00004qi6	Download File View File

Cellobiose dehydrogenase from Myriococcum thermophilum, MtCDH

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermothelomyces myriococcoides
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	FAD, HEM, MAN, NAG

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4QI7 \| pdb_00004qi7	Download File View File

Cellobiose dehydrogenase from Neurospora crassa, NcCDH

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Neurospora crassa OR74A
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	FAD, HEM, MAN, MG, NAG, PT

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4QI8 \| pdb_00004qi8	Download File View File

Lytic polysaccharide monooxygenase 9F from Neurospora crassa, NcLPMO9F

Tan, T.C., Gandini, R., Sygmund, C., Kittl, R., Haltrich, D., Ludwig, R., Hallberg, B.M., Divne, C.

(2015) Nat Commun 6: 7542-7542

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Neurospora crassa
Macromolecule	Lytic polysaccharide monooxygenase (protein)
Unique Ligands	CU, NO3

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5MLZ \| pdb_00005mlz	Download File View File

Dolichyl phosphate mannose synthase in complex with GDP and Mg2+

Gandini, R., Reichenbach, T., Tan, T.C., Divne, C.

(2017) Nat Commun 8: 120-120

Released	2017-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Dolichol monophosphate mannose synthase (protein)
Unique Ligands	CL, GDP, LDA, MG

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5MM0 \| pdb_00005mm0	Download File View File

Dolichyl phosphate mannose synthase in complex with GDP-mannose and Mn2+ (donor complex)

Gandini, R., Reichenbach, T., Tan, T.C., Divne, C.

(2017) Nat Commun 8: 120-120

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Dolichol monophosphate mannose synthase (protein)
Unique Ligands	CL, GDD, LDA, MN

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5MM1 \| pdb_00005mm1	Download File View File

Dolichyl phosphate mannose synthase in complex with GDP and dolichyl phosphate mannose

Gandini, R., Reichenbach, T., Tan, T.C., Divne, C.

(2017) Nat Commun 8: 120-120

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Dolichol monophosphate mannose synthase (protein)
Unique Ligands	GDP, MJC

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6YV8 \| pdb_00006yv8	Download File View File

Mannosyltransferase PcManGT from Pyrobaculum calidifontis in complex with GDP and Mn2+

Divne, C., Gandini, R.

(2020) J Mol Biology 432: 4658-4672

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrobaculum calidifontis JCM 11548
Macromolecule	Glycosyl transferase, family 2 (protein)
Unique Ligands	GDP, MN

1 to 25 of 29 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZYI | pdb_00001zyi

4MOE | pdb_00004moe

4MOF | pdb_00004mof

4MOG | pdb_00004mog

4MOH | pdb_00004moh

4MOI | pdb_00004moi

4MOJ | pdb_00004moj

4MOK | pdb_00004mok

4MOL | pdb_00004mol

4MOM | pdb_00004mom

4MOO | pdb_00004moo

4MOP | pdb_00004mop

4MOQ | pdb_00004moq

4MOR | pdb_00004mor

4MOS | pdb_00004mos

4QI3 | pdb_00004qi3

4QI4 | pdb_00004qi4

4QI5 | pdb_00004qi5

4QI6 | pdb_00004qi6

4QI7 | pdb_00004qi7

4QI8 | pdb_00004qi8

5MLZ | pdb_00005mlz

5MM0 | pdb_00005mm0

5MM1 | pdb_00005mm1

6YV8 | pdb_00006yv8