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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Foucar, L."

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Search Summary

This query matches 226 Structures.

Refinements

Structure Determination Methodology

experimental (226)

Scientific Name of Source Organism

	Bos taurus (83)
	Thermus thermophilus HB8 (38)
	Homo sapiens (11)
	Thermus thermophilus (11)
	Mus musculus (10)
	Cereibacter sphaeroides (8)
	Paracoccus denitrificans (8)
	Komagataella pastoris (7)
	Saccharomyces cerevisiae S288C (7)
	Sus scrofa (7)

More...

Taxonomy

	Eukaryota (134)
	Bacteria (97)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (142)
	ELECTRON MICROSCOPY (82)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (226)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (45)
	2.0 - 2.5 (52)
	2.5 - 3.0 (51)
	3.0 - 3.5 (41)
	3.5 - 4.0 (9)
	4.0 - 4.5 (5)
	> 4.5 (16)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (5)
	2005 - 2009 (23)
	2010 - 2014 (48)
	2015 - 2019 (45)
	2020 - 2024 (93)
	2025 - 2029 (4)

Enzyme Classification Name

	Translocases (226)
	Oxidoreductases (153)
	Transferases (3)
	Hydrolases (1)

Membrane Protein Annotation

	PDBTM (185)
	mpstruc (91)
	MemProtMD (135)
	OPM (47)

Symmetry Type

	Asymmetric (175)
	Cyclic (53)

SCOP Classification

	Membrane and cell surface proteins and peptides (103)
	All alpha proteins (60)
	All beta proteins (109)
	Small proteins (56)
	Artifacts (12)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 226 Structures

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1AR1 \| pdb_00001ar1	Download File View File

Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans two-subunit Cytochrome C Oxidase Complexed with an Antibody Fv Fragment

Ostermeier, C., Harrenga, A., Ermler, U., Michel, H.

(1997) Proc Natl Acad Sci U S A 94: 10547-10553

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus Paracoccus denitrificans
Macromolecule	ANTIBODY FV FRAGMENT (protein) CYTOCHROME C OXIDASE (protein)
Unique Ligands	CA, CU, HEA, LDA, MG

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1EHK \| pdb_00001ehk	Download File View File

CRYSTAL STRUCTURE OF THE ABERRANT BA3-CYTOCHROME-C OXIDASE FROM THERMUS THERMOPHILUS

Soulimane, T., Buse, G., Bourenkov, G.P., Bartunik, H.D., Huber, R., Than, M.E.

(2000) EMBO J 19: 1766-1776

Released	2001-02-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	BA3-TYPE CYTOCHROME-C OXIDASE (protein)
Unique Ligands	BNG, CU, CUA, HAS, HEM

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1M56 \| pdb_00001m56	Download File View File

Structure of cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type)

Svensson-Ek, M., Abramson, J., Larsson, G., Tornroth, S., Brezezinski, P., Iwata, S.

(2002) J Mol Biology 321: 329-339

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C OXIDASE (protein)
Unique Ligands	3PE, CA, CU, HEA, MG

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1M57 \| pdb_00001m57	Download File View File

Structure of cytochrome c oxidase from Rhodobacter sphaeroides (EQ(I-286) mutant))

Svensson-Ek, M., Abramson, J., Larsson, G., Tornroth, S., Brezezinski, P., Iwata, S.

(2002) J Mol Biology 321: 329-339

Released	2002-08-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C OXIDASE (protein)
Unique Ligands	3PE, CA, CU, HEA, MG

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1OCC \| pdb_00001occ	Download File View File

STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE

Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yoshikawa, S.

(1996) Science 272: 1136-1144

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, ZN

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1OCO \| pdb_00001oco	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CMO, CU, HEA, MG, NA, ZN

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1OCR \| pdb_00001ocr	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, NA, ZN

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1OCZ \| pdb_00001ocz	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN AZIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	AZI, CU, HEA, MG, NA, ZN

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1QLE \| pdb_00001qle	Download File View File

CRYO-STRUCTURE OF THE PARACOCCUS DENITRIFICANS FOUR-SUBUNIT CYTOCHROME C OXIDASE IN THE COMPLETELY OXIDIZED STATE COMPLEXED WITH AN ANTIBODY FV FRAGMENT

Harrenga, A., Michel, H.

(1999) J Biological Chem 274: 33296

Released	1999-12-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Paracoccus denitrificans
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, CU, CUA, HEA, MN, PC1

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1V54 \| pdb_00001v54	Download File View File

Bovine heart cytochrome c oxidase at the fully oxidized state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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1V55 \| pdb_00001v55	Download File View File

Bovine heart cytochrome c oxidase at the fully reduced state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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1W2L \| pdb_00001w2l	Download File View File

Cytochrome c domain of caa3 oxygen oxidoreductase

Srinivasan, V., Rajendran, C., Sousa, F.L., Melo, A.M.P., Saraiva, L.M., Pereira, M.M., Santana, M., Teixeira, M., Michel, H.

(2005) J Mol Biology 345: 1047-1057

Released	2005-01-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Rhodothermus marinus
Macromolecule	CYTOCHROME OXIDASE SUBUNIT II (protein)
Unique Ligands	ACT, HEC, TRS

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1XME \| pdb_00001xme	Download File View File

Structure of Recombinant Cytochrome ba3 Oxidase from Thermus thermophilus

Hunsicker-Wang, L.M., Pacoma, R.L., Chen, Y., Fee, J.A., Stout, C.D.

(2005) Acta Crystallogr D Biol Crystallogr 61: 340-343

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	Cytochrome c oxidase polypeptide I (protein) Cytochrome c oxidase polypeptide II (protein) Cytochrome c oxidase polypeptide IIA (protein)
Unique Ligands	BNG, CU, CUA, GOL, HAS, HEM

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2CUA \| pdb_00002cua	Download File View File

THE CUA DOMAIN OF CYTOCHROME BA3 FROM THERMUS THERMOPHILUS

Williams, P.A., Blackburn, N.J., Sanders, D., Bellamy, H., Stura, E.A., Fee, J.A., Mcree, D.E.

(1999) Nat Struct Biol 6: 509-516

Released	1999-05-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (CUA) (protein)
Unique Ligands	CUA, ZN

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2DYR \| pdb_00002dyr	Download File View File

Bovine heart cytochrome C oxidase at the fully oxidized state

Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2007) EMBO J 26: 1713-1725

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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2DYS \| pdb_00002dys	Download File View File

Bovine heart cytochrome C oxidase modified by DCCD

Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2007) EMBO J 26: 1713-1725

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DCW, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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2EIJ \| pdb_00002eij	Download File View File

Bovine heart cytochrome C oxidase in the fully reduced state

Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-o, S., Yamashita, E., Aoyama, H., Tsukihara, T., Yoshikawa, S.

(2007) Proc Natl Acad Sci U S A 104: 7881-7886

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, ZN

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2EIK \| pdb_00002eik	Download File View File

Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state

Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-O, S., Yamashita, E., Aoyama, H., Tsukihara, T., Yoshikawa, S.

(2007) Proc Natl Acad Sci U S A 104: 7881-7886

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CD, CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, ZN

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2EIL \| pdb_00002eil	Download File View File

Cadmium ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state

Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-o, S., Yamashita, E., Aoyama, H., Tsukihara, T., Yoshikawa, S.

(2007) Proc Natl Acad Sci U S A 104: 7881-7886

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CD, CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, ZN

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2EIM \| pdb_00002eim	Download File View File

Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully reduced state

Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-o, S., Yamashita, E., Aoyama, H., Tsukihara, T., Yoshikawa, S.

(2007) Proc Natl Acad Sci U S A 104: 7881-7886

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, ZN

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2EIN \| pdb_00002ein	Download File View File

Zinc ion binding structure of bovine heart cytochrome C oxidase in the fully oxidized state

Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-o, S., Yamashita, E., Aoyama, H., Tsukihara, T., Yoshikawa, S.

(2007) Proc Natl Acad Sci U S A 104: 7881-7886

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, ZN

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2FWL \| pdb_00002fwl	Download File View File

The cytochrome c552/CuA complex from Thermus thermophilus

Muresanu, L., Pristovsek, P., Loehr, F., Maneg, O., Mukrasch, M.D., Rueterjans, H., Ludwig, B., Luecke, C.

(2006) J Biological Chem 281: 14503-14513

Released	2006-03-28
Method	SOLUTION NMR
Organisms	Thermus thermophilus HB8
Macromolecule	Cytochrome c oxidase subunit II (protein) Cytochrome c-552 (protein)
Unique Ligands	CUA, HEC

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2GSM \| pdb_00002gsm	Download File View File

Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides

Qin, L., Hiser, C., Mulichak, A., Garavito, R.M., Ferguson-Miller, S.

(2006) Proc Natl Acad Sci U S A 103: 16117-16122

Released	2006-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU, DMU, HEA, MG, OH, TRD