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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fraser, J.S."

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Search Summary

This query matches 681 Structures.

Refinements

Structure Determination Methodology

experimental (681)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (329)
	Homo sapiens (168)
	Escherichia coli (49)
	Gallus gallus (31)
	Saccharomyces cerevisiae RM11-1a (16)
	Thermoascus aurantiacus (12)
	Mus musculus (9)
	Thaumatococcus daniellii (9)
	Escherichia coli K-12 (6)
	Saccharomyces cerevisiae S288C (6)

More...

Taxonomy

	Riboviria (333)
	Eukaryota (267)
	Bacteria (77)
	other sequences (5)
	Duplodnaviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (637)
	ELECTRON MICROSCOPY (43)
	NEUTRON DIFFRACTION (3)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (681)
	RNA (36)

Refinement Resolution (Å)

	0.5 - 1.0 (25)
	1.0 - 1.5 (371)
	1.5 - 2.0 (219)
	2.0 - 2.5 (41)
	2.5 - 3.0 (18)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (31)
	2015 - 2019 (212)
	2020 - 2024 (425)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (520)
	Isomerases (45)
	Oxidoreductases (37)
	Transferases (4)
	Lyases (4)

Membrane Protein Annotation

	mpstruc (6)
	MemProtMD (4)
	PDBTM (4)
	OPM (1)

Symmetry Type

	Asymmetric (655)
	Cyclic (31)
	Helical (4)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (278)
	Artifacts (125)
	All beta proteins (58)
	All alpha proteins (31)
	Alpha and beta proteins (a+b) (20)
	Multi-domain proteins (alpha and beta) (11)

AllSelected

1 to 25 of 681 Structures

Page 1 of 28

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2NT3 \| pdb_00002nt3	Download File View File

Receiver domain from Myxococcus xanthus social motility protein FrzS (Y102A Mutant)

Fraser, J.S., Echols, N., Merlie, J.P., Zusman, D.R., Alber, T.

(2007) Mol Microbiol 65: 319-332

Released	2007-03-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Myxococcus xanthus
Macromolecule	Response regulator homolog (protein)

Explore in 3D

3J9J \| pdb_00003j9j	Download File View File

Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy

Wang, R.Y.-R., Barad, B.A., Fraser, J.S., DiMaio, F.

(2015) Nat Methods 12: 943-946

Released	2015-09-02
Method	ELECTRON MICROSCOPY 3.275 Å
Organisms	Rattus norvegicus
Macromolecule	Transient receptor potential cation channel subfamily V member 1 (protein)

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3K0M \| pdb_00003k0m	Download File View File

Cryogenic structure of CypA

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0N \| pdb_00003k0n	Download File View File

Room temperature structure of CypA

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.391 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0O \| pdb_00003k0o	Download File View File

Room temperature structure of CypA mutant Ser99Thr

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0P \| pdb_00003k0p	Download File View File

Cryogenic structure of CypA mutant Ser99Thr

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.649 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0Q \| pdb_00003k0q	Download File View File

Cryogenic structure of CypA mutant Ser99Thr (2)

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.317 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0R \| pdb_00003k0r	Download File View File

Cryogenic structure of CypA mutant Arg55Lys

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.424 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

Explore in 3D

3TGP \| pdb_00003tgp	Download File View File

Room temperature H-ras

Fraser, J.S., Alber, T.

(2011) Proc Natl Acad Sci U S A 108: 16247-16252

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.3075 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein)
Unique Ligands	GNP, MG

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4KJJ \| pdb_00004kjj	Download File View File

Cryogenic WT DHFR

van den Bedem, H., Bhabha, G., Yang, K., Wright, P.E., Fraser, J.S.

(2013) Nat Methods 10: 896-902

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	FOL, NAP

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4KJK \| pdb_00004kjk	Download File View File

Room Temperature WT DHFR

van den Bedem, H., Bhabha, G., Yang, K., Wright, P.E., Fraser, J.S.

(2013) Nat Methods 10: 896-902

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.351 Å
Organisms	Escherichia coli K-12
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	CA, FOL, NAP

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4KJL \| pdb_00004kjl	Download File View File

Room Temperature N23PPS148A DHFR

van den Bedem, H., Bhabha, G., Yang, K., Wright, P.E., Fraser, J.S.

(2013) Nat Methods 10: 896-902

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Escherichia coli K-12
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	FOL, NAP

Explore in 3D

4NVA \| pdb_00004nva	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	HEM

Explore in 3D

4NVB \| pdb_00004nvb	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	25T, HEM

Explore in 3D

4NVC \| pdb_00004nvc	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	BEN, HEM

Explore in 3D

4NVD \| pdb_00004nvd	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	1LQ, HEM

Explore in 3D

4NVE \| pdb_00004nve	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	BZI, HEM

Explore in 3D

4NVF \| pdb_00004nvf	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	HEM, MES

Explore in 3D

4NVG \| pdb_00004nvg	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.742 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2N9, HEM, MES, PO4

Explore in 3D

4NVH \| pdb_00004nvh	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2NB, HEM

Explore in 3D

4NVI \| pdb_00004nvi	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2NW, HEM, PO4

Explore in 3D

4NVJ \| pdb_00004nvj	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.813 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2NX, HEM, MES

Explore in 3D

4NVK \| pdb_00004nvk	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2NY, HEM, PO4

Explore in 3D

4NVL \| pdb_00004nvl	Download File View File

Predicting protein conformational response in prospective ligand discovery.

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.432 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2NZ, HEM, PO4

Explore in 3D

4NVM \| pdb_00004nvm	Download File View File

Predicting protein conformational response in prospective ligand discovery

Fischer, M., Fraser, J.S.

(2014) Nat Chem 6: 575-583

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Saccharomyces cerevisiae RM11-1a
Macromolecule	Cytochrome c peroxidase (protein)
Unique Ligands	2O0, HEM, MES, PO4

1 to 25 of 681 Structures

Page 1 of 28

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2NT3 | pdb_00002nt3

3J9J | pdb_00003j9j

3K0M | pdb_00003k0m

3K0N | pdb_00003k0n

3K0O | pdb_00003k0o

3K0P | pdb_00003k0p

3K0Q | pdb_00003k0q

3K0R | pdb_00003k0r

3TGP | pdb_00003tgp

4KJJ | pdb_00004kjj

4KJK | pdb_00004kjk

4KJL | pdb_00004kjl

4NVA | pdb_00004nva

4NVB | pdb_00004nvb

4NVC | pdb_00004nvc

4NVD | pdb_00004nvd

4NVE | pdb_00004nve

4NVF | pdb_00004nvf

4NVG | pdb_00004nvg

4NVH | pdb_00004nvh

4NVI | pdb_00004nvi

4NVJ | pdb_00004nvj

4NVK | pdb_00004nvk

4NVL | pdb_00004nvl

4NVM | pdb_00004nvm