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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gelin, M."

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Search Summary

This query matches 714 Structures.

Refinements

Structure Determination Methodology

experimental (714)

Scientific Name of Source Organism

	Homo sapiens (392)
	Severe acute respiratory syndrome coronavirus 2 (59)
	Saccharomyces cerevisiae (23)
	synthetic construct (23)
	Mus musculus (20)
	Plasmodium falciparum 3D7 (15)
	Rattus norvegicus (14)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (12)
	Cryptosporidium parvum Iowa II (11)
	Ebola virus - Mayinga, Zaire, 1976 (11)

More...

Taxonomy

	Eukaryota (550)
	Bacteria (111)
	Riboviria (92)
	other sequences (23)
	Archaea (12)
	environmental samples (5)
	Monodnaviria (4)
	Duplodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (561)
	ELECTRON MICROSCOPY (146)
	SOLUTION NMR (6)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (713)
	DNA (64)
	RNA (27)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (80)
	1.5 - 2.0 (210)
	2.0 - 2.5 (163)
	2.5 - 3.0 (122)
	3.0 - 3.5 (68)
	3.5 - 4.0 (32)
	4.0 - 4.5 (14)
	> 4.5 (17)

Release Date

	1995 - 1999 (13)
	2000 - 2004 (9)
	2005 - 2009 (87)
	2010 - 2014 (107)
	2015 - 2019 (141)
	2020 - 2024 (350)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (235)
	Oxidoreductases (30)
	Transferases (85)
	Isomerases (24)
	Lyases (12)
	Ligases (6)

Membrane Protein Annotation

	PDBTM (96)
	mpstruc (73)
	MemProtMD (82)
	OPM (58)

Symmetry Type

	Asymmetric (505)
	Cyclic (199)
	Dihedral (14)
	Helical (3)
	Icosahedral (6)

SCOP Classification

	All beta proteins (53)
	Alpha and beta proteins (a+b) (61)
	Alpha and beta proteins (a/b) (67)
	All alpha proteins (36)
	Artifacts (40)
	Multi-domain proteins (alpha and beta) (12)
	Membrane and cell surface proteins and peptides (8)

AllSelected

1 to 25 of 714 Structures

Page 1 of 29

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1AAX \| pdb_00001aax	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TWO BIS(PARA-PHOSPHOPHENYL)METHANE (BPPM) MOLECULES

Puius, Y.A., Zhao, Y., Sullivan, M., Lawrence, D., Almo, S.C., Zhang, Z.-Y.

(1997) Proc Natl Acad Sci U S A 94: 13420-13425

Released	1998-03-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	BPM, MG

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1BF5 \| pdb_00001bf5	Download File View File

TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX

Kuriyan, J., Zhao, Y., Chen, X., Vinkemeier, U., Jeruzalmi, D., Darnell Jr., J.E.

(1998) Cell 93: 827-839

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA (protein) DNA (5'-D(APCPAPGPTPTPTPCPCPCPGPTPAPAPAPTPG PC)-3') (nucleic acid) DNA (5'-D(TPGPCPAPTPTPTPAPCPGPGPGPAPAPAPCPT PG)-3') (nucleic acid)

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1D5A \| pdb_00001d5a	Download File View File

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM

Zhao, Y., Jeruzalmi, D., Leighton, L., Lasken, R., Kuriyan, J.

(1999) Structure 7: 1189-1199

Released	2000-03-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Desulfurococcus sp. Tok
Macromolecule	PROTEIN (DNA POLYMERASE) (protein)
Unique Ligands	MG, SO4

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1EEN \| pdb_00001een	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-D-A-D-BPA-PTYR-L-I-P-Q-Q-G

Puius, Y.A., Zhao, Y., Almo, S.C., Zhang, Z.Y.

(2000) Biochemistry 39: 8171-8179

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ALA-ASP-PBF-PTR-LEU-ILE-PRO (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	ACY, MG

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1EV7 \| pdb_00001ev7	Download File View File

CRYSTAL STRUCTURE OF DNA RESTRICTION ENDONUCLEASE NAEI

Huai, Q., Colandene, J.D., Chen, Y., Luo, F., Zhao, Y.

(2000) EMBO J 19: 3110-3118

Released	2000-10-19
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Lentzea aerocolonigenes
Macromolecule	TYPE IIE RESTRICTION ENDONUCLEASE NAEI (protein)

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1F0J \| pdb_00001f0j	Download File View File

CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B

Xu, R.X., Hassell, A.M., Vanderwall, D., Lambert, M.H., Holmes, W.D., Luther, M.A., Rocque, W.J., Milburn, M.V., Zhao, Y., Ke, H., Nolte, R.T.

(2000) Science 288: 1822-1825

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHODIESTERASE 4B (protein)
Unique Ligands	ARS, MG, ZN

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1FGL \| pdb_00001fgl	Download File View File

Cyclophilin A complexed with a fragment of HIV-1 GAG protein

Zhao, Y., Chen, Y., Schutkowski, M., Fischer, G., Ke, H.

(1997) Structure 5: 139-146

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (WMJ2 ISOLATE)
Macromolecule	CYCLOPHILIN A (protein) HIV-1 GAG PROTEIN (protein)

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1JQJ \| pdb_00001jqj	Download File View File

Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex

Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., Kuriyan, J.

(2001) Cell 106: 417-428

Released	2001-11-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	DNA polymerase III, beta chain (protein) DNA polymerase III, delta subunit (protein)

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1JQL \| pdb_00001jql	Download File View File

Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)

Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., Kuriyan, J.

(2001) Cell 106: 417-428

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA Polymerase III, BETA CHAIN (protein) DNA Polymerase III, DELTA SUBUNIT (protein)

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1M63 \| pdb_00001m63	Download File View File

Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes

Huai, Q., Kim, H.-Y., Liu, Y., Zhao, Y., Mondragon, A., Liu, J.O., Ke, H.

(2002) Proc Natl Acad Sci U S A 99: 12037

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CALCINEURIN B SUBUNIT ISOFORM 1 (protein) CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein) SERINE/THREONINE PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT, ALPHA ISOFORM (protein)
Unique Ligands	CA, FE, ZN

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1ONS \| pdb_00001ons	Download File View File

Crystal structure of Escherichia coli heat shock protein YedU

Zhao, Y., Fox, R.O.

(2003) Protein Sci 12: 2303-2311

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein hchA (protein)
Unique Ligands	ZN

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1PTY \| pdb_00001pty	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TWO PHOSPHOTYROSINE MOLECULES

Zhao, Y., Puius, Y.A., Sullivan, M., Lawrence, D., Almo, S.C., Zhang, Z.-Y.

(1997) Proc Natl Acad Sci U S A 94: 13420-13425

Released	1998-01-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	MG, PTR

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1QQC \| pdb_00001qqc	Download File View File

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK

Zhao, Y., Jeruzalmi, D., Leighton, L., Lasken, R., Kuriyan, J.

(1999) Structure 7: 1189-1199

Released	1999-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Desulfurococcus sp. Tok
Macromolecule	DNA POLYMERASE II (protein)
Unique Ligands	MG, SO4

Explore in 3D

1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1RMH \| pdb_00001rmh	Download File View File

RECOMBINANT CYCLOPHILIN A FROM HUMAN T CELL

Zhao, Y., Ke, H.

(1996) Biochemistry 35: 7356-7361

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	AAPF PEPTIDE SUBSTRATE (protein) CYCLOPHILIN A (protein)

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1VBS \| pdb_00001vbs	Download File View File

STRUCTURE OF CYCLOPHILIN COMPLEXED WITH (D)ALA CONTAINING TETRAPEPTIDE

Zhao, Y., Chen, Y., Schutkowski, M., Fischer, G., Ke, H.

(1998) FEBS Lett 432: 202-206

Released	1999-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CYCLOPHILIN A (protein) TETRAPEPTIDE (protein)

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1VBT \| pdb_00001vbt	Download File View File

Structure of cyclophilin complexed with sulfur-substituted tetrapeptide AAPF

Zhao, Y., Chen, Y., Schutkowski, M., Fischer, G., Ke, H.

To be published

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CYCLOPHILIN A (protein) SULFUR-SUBSTITUTED TETRAPEPTIDE (protein)

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1Z6G \| pdb_00001z6g	Download File View File

Crystal structure of guanylate kinase from Plasmodium falciparum

Mulichak, A.M., Lew, J., Artz, J., Choe, J., Walker, J.R., Zhao, Y., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Gao, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	guanylate kinase (protein)
Unique Ligands	EPE, SO4

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1ZO2 \| pdb_00001zo2	Download File View File

Structure of nuclear transport factor 2 (Ntf2) from Cryptosporidium parvum

Choe, J., Artz, J.D., Gao, M., Lew, J., Zhao, Y., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-05-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryptosporidium parvum
Macromolecule	nuclear transport factor 2 (protein)

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1ZWI \| pdb_00001zwi	Download File View File

Structure of mutant KcsA potassium channel

Cordero-Morales, J.F., Cuello, L.G., Zhao, Y., Jogini, V., Cortes, D.M., Roux, B., Perozo, E.

(2006) Nat Struct Mol Biol 13: 311-318

Released	2006-03-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein) monoclonal antibody light chain (protein) monoclonal antibody, heavy chain (protein)
Unique Ligands	DGA, F09, K

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2A22 \| pdb_00002a22	Download File View File

Structure of Vacuolar Protein Sorting 29 from Cryptosporidium Parvum

Brokx, S., Zhao, Y., Alam, Z., Lew, J., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Walker, J.R., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.198 Å
Organisms	Cryptosporidium parvum
Macromolecule	vacuolar protein sorting 29 (protein)

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2AIF \| pdb_00002aif	Download File View File

Crystal Structure of High Mobility Like Protein, NHP2, putative from Cryptosporidium parvum

Dong, A., Zhao, Y., Lew, J., Alam, Z., Melone, M., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Sundstrom, M., Hui, R., Bochkarev, A., Artz, J., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.895 Å
Organisms	Cryptosporidium parvum
Macromolecule	ribosomal protein L7A (protein)

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2AMX \| pdb_00002amx	Download File View File

Crystal structure of Plasmodium Yoelii Adenosine deaminase (PY02076)

Dong, A., Vedadi, M., Wasney, G., Zhao, Y., Lew, J., Alam, Z., Melone, M., Koeieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Amani, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Plasmodium yoelii
Macromolecule	adenosine deaminase (protein)
Unique Ligands	CO, UNX

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2AQW \| pdb_00002aqw	Download File View File

Structure of putative orotidine-monophosphate-decarboxylase from Plasmodium yoelii (PY01515)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium yoelii
Macromolecule	putative orotidine-monophosphate-decarboxylase (protein)
Unique Ligands	IOD, SO4

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2ATK \| pdb_00002atk	Download File View File

Structure of a mutant KcsA K+ channel

Cordero-Morales, J.F., Cuello, L.G., Zhao, Y., Jogini, V., Chakrapani, S., Roux, B., Perozo, E.

(2006) Nat Struct Mol Biol 13: 311-318

Released	2006-03-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB FRAGMENT HEAVY CHAIN (protein) ANTIBODY FAB FRAGMENT LIGHT CHAIN (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, K

1 to 25 of 714 Structures

Page 1 of 29

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AAX | pdb_00001aax

1BF5 | pdb_00001bf5

1D5A | pdb_00001d5a

1EEN | pdb_00001een

1EV7 | pdb_00001ev7

1F0J | pdb_00001f0j

1FGL | pdb_00001fgl

1JQJ | pdb_00001jqj

1JQL | pdb_00001jql

1M63 | pdb_00001m63

1ONS | pdb_00001ons

1PTY | pdb_00001pty

1QQC | pdb_00001qqc

1R5I | pdb_00001r5i

1RMH | pdb_00001rmh

1VBS | pdb_00001vbs

1VBT | pdb_00001vbt

1Z6G | pdb_00001z6g

1ZO2 | pdb_00001zo2

1ZWI | pdb_00001zwi

2A22 | pdb_00002a22

2AIF | pdb_00002aif

2AMX | pdb_00002amx

2AQW | pdb_00002aqw

2ATK | pdb_00002atk