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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Heinemann, U."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Cryptosporidium hominis (16)
	Homo sapiens (6)
	Lacticaseibacillus casei (4)
	Escherichia coli (3)
	Mycobacterium tuberculosis H37Rv (2)
	Thermotoga maritima (2)
	Bacillus subtilis (1)
	Enterococcus faecalis (1)
	Enterococcus faecalis V583 (1)
	Mus musculus (1)

More...

Taxonomy

	Eukaryota (23)
	Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (41)

Polymer Entity Type

	Protein (37)
	DNA (4)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (22)
	3.0 - 3.5 (6)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (6)
	2000 - 2004 (4)
	2005 - 2009 (1)
	2010 - 2014 (8)
	2015 - 2019 (16)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (22)
	Oxidoreductases (3)
	Hydrolases (2)

Symmetry Type

	Cyclic (31)
	Asymmetric (5)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (30)
	Alpha and beta proteins (a/b) (13)
	Artifacts (5)

AllSelected

1 to 25 of 41 Structures

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1B02 \| pdb_00001b02	Download File View File

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS

Fox, K.M., Maley, F., Garibian, A., Changchien, L., Vanroey, P.

(1999) Protein Sci 8: 538-544

Released	1999-03-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	C2F, UFP

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1BJG \| pdb_00001bjg	Download File View File

D221(169)N MUTANT DOES NOT PROMOTE OPENING OF THE COFACTOR IMIDAZOLIDINE RING

Sage, C.R., Michelitsch, M.D., Finer-Moore, J., Stroud, R.M.

(1998) Biochemistry 37: 13893-13901

Released	1998-11-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	TMF, UFP

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1DNF \| pdb_00001dnf	Download File View File

EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG)

Coll, M., Saal, D., Frederick, C.A., Aymami, J., Rich, A., Wang, A.H.-J.

(1989) Nucleic Acids Res 17: 911-923

Released	1990-10-15
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	DNA (5'-D(CPGPCPGP(UFP)PG)-3') (nucleic acid)
Unique Ligands	MG

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1ICG \| pdb_00001icg	Download File View File

STRUCTURE OF THE HYBRID RNA/DNA R-GCUUCGGC-D[F]U IN PRESENCE OF IR(NH3)6+++

Cruse, W., Saludjian, P., Neuman, A., Prange, T.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1609-1613

Released	2001-04-09
Method	X-RAY DIFFRACTION 1.53 Å
Macromolecule	5'-R(GPCPUPUPCPGPGPC)-D(P*(UFP))-3' (hybrid)
Unique Ligands	CL, IRI

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1ID9 \| pdb_00001id9	Download File View File

STRUCTURE OF THE HYBRID RNA/DNA R-GCUUCGGC-D[F]U IN PRESENCE OF RH(NH3)6+++

Cruse, W., Saludjian, P., Neuman, A., Prange, T.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1609-1613

Released	2001-04-12
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-R(GPCPUPUPCPGPGPC)-D(P*(UFP))-3' (hybrid)
Unique Ligands	CL, RHD

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1O28 \| pdb_00001o28	Download File View File

Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FdUMP at 2.1 A resolution

Mathews, I.I., Deacon, A.M., Canaves, J.M., McMullan, D., Lesley, S.A., Agarwalla, S., Kuhn, P., Joint Center for Structural Genomics (JCSG)

(2003) Structure 11: 677-690

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	Thymidylate synthase thyX (protein)
Unique Ligands	EPE, PGE, UFP

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1O29 \| pdb_00001o29	Download File View File

Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and FdUMP at 2.0 A resolution

Mathews, I.I., Deacon, A.M., Canaves, J.M., McMullan, D., Lesley, S.A., Agarwalla, S., Kuhn, P., Joint Center for Structural Genomics (JCSG)

(2003) Structure 11: 677-690

Released	2003-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Thymidylate synthase thyX (protein)
Unique Ligands	FAD, UFP

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1TDB \| pdb_00001tdb	Download File View File

STRUCTURES OF THYMIDYLATE SYNTHASE WITH A C-TERMINAL DELETION: ROLE OF THE C-TERMINUS IN ALIGNMENT OF D/UMP AND CH2H4FOLATE

Perry, K.M., Carreras, C.W., Chang, L.C., Santi, D.V., Stroud, R.M.

(1993) Biochemistry 32: 7116-7125

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	UFP

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1TLS \| pdb_00001tls	Download File View File

THYMIDYLATE SYNTHASE TERNARY COMPLEX WITH FDUMP AND METHYLENETETRAHYDROFOLATE

Hyatt, D.C., Maley, F., Montfort, W.R.

(1997) Biochemistry 36: 4585-4594

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	C2F, UFP

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1TSN \| pdb_00001tsn	Download File View File

THYMIDYLATE SYNTHASE TERNARY COMPLEX WITH FDUMP AND METHYLENETETRAHYDROFOLATE

Hyatt, D.C., Maley, F., Montfort, W.R.

(1997) Biochemistry 36: 4585-4594

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	C2F, PO4, UFP

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1VZC \| pdb_00001vzc	Download File View File

L. CASEI THYMIDYLATE SYNTHASE MUTANT E60Q BINARY COMPLEX WITH FDUMP

Birdsall, D.L., Finer-Moore, J., Stroud, R.M.

(1998) Protein Eng 11: 171-183

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	UFP

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1VZD \| pdb_00001vzd	Download File View File

L. CASEI THYMIDYLATE SYNTHASE MUTANT E60Q TERNARY COMPLEX WITH FDUMP AND CB3717

Birdsall, D.L., Finer-Moore, J., Stroud, R.M.

(1998) Protein Eng 11: 171-183

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, UFP

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2TDD \| pdb_00002tdd	Download File View File

STRUCTURES OF THYMIDYLATE SYNTHASE WITH A C-TERMINAL DELETION: ROLE OF THE C-TERMINUS IN ALIGNMENT OF D/UMP AND CH2H4FOLATE

Perry, K.M., Carreras, C.W., Chang, L.C., Santi, D.V., Stroud, R.M.

(1993) Biochemistry 32: 7116-7125

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	THF, UFP

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3EJL \| pdb_00003ejl	Download File View File

Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability

Huang, X., Gibson, L.M., Bell, B.J., Lovelace, L.L., Pena, M.M., Berger, F.G., Berger, S.H.

(2010) Biochemistry 49: 2475-2482

Released	2010-03-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	PO4, UFP

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3GWC \| pdb_00003gwc	Download File View File

Crystal structure of Mycobacterium tuberculosis thymidylate synthase X bound to FdUMP and FAD

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Thymidylate synthase thyX (protein)
Unique Ligands	FAD, GOL, UFP

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3H9K \| pdb_00003h9k	Download File View File

Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry

Gibson, L.M., Lovelace, L.L., Lebioda, L.

(2011) Acta Crystallogr D Biol Crystallogr 67: 60-66

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	EDO, PO4, UFP

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4FOA \| pdb_00004foa	Download File View File

Crystal Structure of the Mtb ThyA in Complex with 5-fluoro-dUMP

Reddy, M.C.M., Bruning, J.B., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

To be published

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.253 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	UFP

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4FOG \| pdb_00004fog	Download File View File

Crystal Structure of Mtb ThyA in Complex with 5-Fluoro-dUMP and 5-methyltetrahydrofolic acid

Reddy, M.C.M., Bruning, J.B., Harshbarger, W., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

To be published

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	C2F, UFP

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4GSI \| pdb_00004gsi	Download File View File

DNA Holliday junction stabilized by fluorine halogen bond. F2J construct of related reference.

Ho, P.S., Carter, M.

(2013) Biochemistry 52: 4891-4903

Released	2013-07-31
Method	X-RAY DIFFRACTION 2.38 Å
Macromolecule	DNA (5'-D(CPCPGPAPTPAPCPCPGPG)-3') (nucleic acid) DNA (5'-D(CPCPGPGPTPAP(UFP)PCPGPG)-3') (nucleic acid)

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4KY8 \| pdb_00004ky8	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, methotrexate, FdUMP and 4-((2-amino-6-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)thio)-2-chlorophenyl)-L-glutamic acid

Kumar, V.P., Anderson, K.S.

(2013) Bioorg Med Chem Lett 23: 5426-5428

Released	2013-08-21
Method	X-RAY DIFFRACTION 3.084 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional thymidylate synthase-dihydrofolate reductase (protein)
Unique Ligands	1UF, MTX, NDP, UFP

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4Q0D \| pdb_00004q0d	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP, methotrexate and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid.

Kumar, V.P., Anderson, K.S.

(2014) Bioorg Med Chem Lett 24: 4158-4161

Released	2014-10-15
Method	X-RAY DIFFRACTION 3.449 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	2XB, MTX, NDP, UFP

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4Q0E \| pdb_00004q0e	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid.

Kumar, V.P., Anderson, K.S.

(2014) Bioorg Med Chem Lett 24: 4158-4161

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	2XB, NDP, UFP

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5FCT \| pdb_00005fct	Download File View File

Mouse thymidylate synthase in ternary complex with FdUMP and methylenetetrahydrofolate.

Dowiercial, A., Wilk, P., Jarmula, A., Rode, W.

(2016) Struct Chem

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	C2F, UFP

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6OJS \| pdb_00006ojs	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP, MTX and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-D-glutamic acid

Czyzyk, D.J., Anderson, K.S., Jorgensen, W.L., Valhondo, M.

(2019) FEBS Lett 593: 2069-2078

Released	2019-06-19
Method	X-RAY DIFFRACTION 3.214 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	D96, MTX, NDP, UFP

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6PF7 \| pdb_00006pf7	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)benzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.795 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG7, SO4, UFP

1 to 25 of 41 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B02 | pdb_00001b02

1BJG | pdb_00001bjg

1DNF | pdb_00001dnf

1ICG | pdb_00001icg

1ID9 | pdb_00001id9

1O28 | pdb_00001o28

1O29 | pdb_00001o29

1TDB | pdb_00001tdb

1TLS | pdb_00001tls

1TSN | pdb_00001tsn

1VZC | pdb_00001vzc

1VZD | pdb_00001vzd

2TDD | pdb_00002tdd

3EJL | pdb_00003ejl

3GWC | pdb_00003gwc

3H9K | pdb_00003h9k

4FOA | pdb_00004foa

4FOG | pdb_00004fog

4GSI | pdb_00004gsi

4KY8 | pdb_00004ky8

4Q0D | pdb_00004q0d

4Q0E | pdb_00004q0e

5FCT | pdb_00005fct

6OJS | pdb_00006ojs

6PF7 | pdb_00006pf7