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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jeoung, J.H."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Escherichia coli (15)
	Rotavirus (4)
	Human picobirnavirus (2)
	Human picobirnavirus strain Hy005102 (1)
	Rosellinia necatrix quadrivirus 1 (1)

Taxonomy

	Bacteria (15)
	Riboviria (8)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (22)

Enzyme Classification Name

Transferases (15)

Symmetry Type

	Cyclic (15)
	Icosahedral (5)
	Asymmetric (3)

AllSelected

1 to 23 of 23 Structures

Page 1 of 1

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5ND1 \| pdb_00005nd1	Download File View File

Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus

Mata, C.P., Luque, D., Gomez Blanco, J., Rodriguez, J.M., Suzuki, N., Ghabrial, S.A., Carrascosa, J.L., Trus, B.L., Caston, J.R.

(2017) PLoS Pathog 13: e1006755-e1006755

Released	2017-11-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Rosellinia necatrix quadrivirus 1
Macromolecule	Capsid protein (protein)

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6Z8D \| pdb_00006z8d	Download File View File

Human Picobirnavirus CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-23
Method	ELECTRON MICROSCOPY 2.63 Å
Organisms	Human picobirnavirus
Macromolecule	Capsid protein precursor (protein)

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6Z8E \| pdb_00006z8e	Download File View File

Human Picobirnavirus Ht-CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-23
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human picobirnavirus
Macromolecule	Capsid protein precursor (protein)

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6Z8F \| pdb_00006z8f	Download File View File

Human Picobirnavirus D45-CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human picobirnavirus strain Hy005102
Macromolecule	Capsid protein precursor (protein)

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8E9C \| pdb_00008e9c	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant AIFS in the ligand-free form at 100 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9D \| pdb_00008e9d	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant AIFS bound to maleic acid at 100 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9J \| pdb_00008e9j	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant HEX in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9K \| pdb_00008e9k	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase bound to maleate at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9L \| pdb_00008e9l	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIT in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9M \| pdb_00008e9m	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIT bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9N \| pdb_00008e9n	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIY in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9O \| pdb_00008e9o	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIY bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9P \| pdb_00008e9p	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9Q \| pdb_00008e9q	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant HEX bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9R \| pdb_00008e9r	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFCS in the ligand-free form at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9S \| pdb_00008e9s	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFCS bound to maleic acid at 278 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	MAE, PLP

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8E9T \| pdb_00008e9t	Download File View File

Crystal structure of wild-type E. coli aspartate aminotransferase in the ligand-free form at 303 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9U \| pdb_00008e9u	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant HEX in the ligand-free form at 303 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-11-09
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8E9V \| pdb_00008e9v	Download File View File

Crystal structure of E. coli aspartate aminotransferase mutant VFIT in the ligand-free form at 303 K

Chica, R.A., St-Jacques, A.D., Rodriguez, J.M., Thompson, M.C.

(2023) Nat Commun 14: 6058-6058

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Escherichia coli
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	PLP, SO4

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8OLB \| pdb_00008olb	Download File View File

SA11 Rotavirus Non-tripsinized Triple Layered Particle

Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.

To be published

Released	2024-09-25
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Rotavirus
Macromolecule	Inner capsid protein VP2 (protein) Intermediate capsid protein VP6 (protein) Outer capsid glycoprotein VP7 (protein)
Unique Ligands	CA, NAG, ZN

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8OLC \| pdb_00008olc	Download File View File

SA11 Rotavirus Trypsinized Triple Layered Particle

Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.

To be published

Released	2024-09-25
Method	ELECTRON MICROSCOPY 3.48 Å
Organisms	Rotavirus
Macromolecule	Inner capsid protein VP2 (protein) Intermediate capsid protein VP6 (protein) Outer capsid glycoprotein VP7 (protein)
Unique Ligands	CA, NAG, ZN