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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jones, E.Y."

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Search Summary

This query matches 351 Structures.

Refinements

Structure Determination Methodology

experimental (351)

Scientific Name of Source Organism

	Homo sapiens (267)
	Mus musculus (51)
	Human immunodeficiency virus 1 (12)
	Drosophila melanogaster (11)
	Xenopus tropicalis (9)
	Human immunodeficiency virus (8)
	Gallus gallus (5)
	Coxsackievirus A10 (3)
	Mycobacteriaceae (3)
	Rattus norvegicus (3)

More...

Taxonomy

	Eukaryota (343)
	Riboviria (32)
	Bacteria (6)
	Eukaryota (eukaryotes) (3)
	Duplodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)
	Archaea (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (343)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (351)

Refinement Resolution (Å)

	1.0 - 1.5 (57)
	1.5 - 2.0 (87)
	2.0 - 2.5 (88)
	2.5 - 3.0 (53)
	3.0 - 3.5 (30)
	3.5 - 4.0 (9)
	4.0 - 4.5 (9)
	> 4.5 (14)

Release Date

	1995 - 1999 (29)
	2000 - 2004 (21)
	2005 - 2009 (54)
	2010 - 2014 (79)
	2015 - 2019 (59)
	2020 - 2024 (109)

Enzyme Classification Name

	Hydrolases (145)
	Transferases (31)
	Ligases (15)
	Oxidoreductases (7)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (281)
	Cyclic (73)
	Icosahedral (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (90)
	Artifacts (51)
	Alpha and beta proteins (a+b) (48)
	Alpha and beta proteins (a/b) (36)
	Small proteins (18)
	All alpha proteins (9)

AllSelected

1 to 25 of 351 Structures

Page 1 of 15

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1A1M \| pdb_00001a1m	Download File View File

MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE TPYDINQML FROM GAG PROTEIN OF HIV2

Smith, K.J., Reid, S.W., Harlos, K., Mcmichael, A.J., Stuart, D.I., Bell, J.I., Jones, E.Y.

(1996) Immunity 4: 215-228

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 2
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain (protein) PEPTIDE TPYDINQML (protein)

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1A1N \| pdb_00001a1n	Download File View File

MHC CLASS I MOLECULE B*3501 COMPLEXED WITH PEPTIDE VPLRPMTY FROM THE NEF PROTEIN (75-82) OF HIV1

Smith, K.J., Reid, S.W., Stuart, D.I., Mcmichael, A.J., Jones, E.Y., Bell, J.I.

(1996) Immunity 4: 203-213

Released	1998-04-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain (protein) PEPTIDE VPLRPMTY (protein)

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1A1O \| pdb_00001a1o	Download File View File

MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE LS6 (KPIVQYDNF) FROM THE MALARIA PARASITE P. FALCIPARUM

Smith, K.J., Reid, S.W., Harlos, K., Mcmichael, A.J., Stuart, D.I., Bell, J.I., Jones, E.Y.

(1996) Immunity 4: 215-228

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain (protein) PEPTIDE LS6 (KPIVQYDNF) (protein)

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1AGB \| pdb_00001agb	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGRKKYKL-3R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGRKKYKL - 3R MUTATION) (protein)

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1AGC \| pdb_00001agc	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYQL-7Q MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYQL - 7Q MUTATION) (protein)

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1AGD \| pdb_00001agd	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYKL-INDEX PEPTIDE)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) (protein)

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1AGE \| pdb_00001age	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYRL-7R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYRL - 7R MUTATION) (protein)

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1AGF \| pdb_00001agf	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKRYKL-5R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION) (protein)

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1AKJ \| pdb_00001akj	Download File View File

COMPLEX OF THE HUMAN MHC CLASS I GLYCOPROTEIN HLA-A2 AND THE T CELL CORECEPTOR CD8

Tormo, J., Stuart, D.I., Jones, E.Y.

(1997) Nature 387: 630-634

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA 2-MICROGLOBULIN (protein) HIV REVERSE TRANSCRIPTASE EPITOPE (protein) MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) (protein) T-CELL CORECEPTOR CD8 (protein)

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1B6U \| pdb_00001b6u	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN KILLER CELL INHIBITORY RECEPTOR (KIR2DL3) SPECIFIC FOR HLA-CW3 RELATED ALLELES

Maenaka, K., Juji, T., Stuart, D.I., Jones, E.Y.

(1999) Structure 7: 391-398

Released	1999-01-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	P58 KILLER CELL INHIBITORY RECEPTOR (protein)

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1B8K \| pdb_00001b8k	Download File View File

Neurotrophin-3 from Human

Robinson, R.C., Radziejewski, C., Stuart, D.I., Jones, E.Y., Choe, S.

(1999) Protein Sci 8: 2589-2597

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (NEUROTROPHIN-3) (protein)

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1B8M \| pdb_00001b8m	Download File View File

BRAIN DERIVED NEUROTROPHIC FACTOR, NEUROTROPHIN-4

Robinson, R.C., Radziejewski, C., Stuart, D.I., Jones, E.Y., Choe, S.

(1999) Protein Sci 8: 2589-2597

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (BRAIN DERIVED NEUROTROPHIC FACTOR) (protein) PROTEIN (NEUROTROPHIN-4) (protein)

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1B98 \| pdb_00001b98	Download File View File

NEUROTROPHIN 4 (HOMODIMER)

Robinson, R.C., Radziejewski, C., Stuart, D.I., Jones, E.Y., Choe, S.

(1999) Protein Sci 8: 2589-2597

Released	1999-02-26
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (NEUROTROPHIN-4) (protein)
Unique Ligands	CL

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1BND \| pdb_00001bnd	Download File View File

STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER

Robinson, R.C., Radziejewski, C., Stuart, D.I., Jones, E.Y.

(1995) Biochemistry 34: 4139-4146

Released	1996-04-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	BRAIN DERIVED NEUROTROPHIC FACTOR (protein) NEUROTROPHIN 3 (protein)
Unique Ligands	IPA

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1BQU \| pdb_00001bqu	Download File View File

CYTOKYNE-BINDING REGION OF GP130

Bravo, J., Staunton, D., Heath, J.K., Jones, E.Y.

(1998) EMBO J 17: 1665-1674

Released	1998-08-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GP130) (protein)
Unique Ligands	GOL, SO4

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1CCZ \| pdb_00001ccz	Download File View File

CRYSTAL STRUCTURE OF THE CD2-BINDING DOMAIN OF CD58 (LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN 3) AT 1.8-A RESOLUTION

Ikemizu, S., Sparks, L.M., Van Der Merwe, P.A., Harlos, K., Stuart, D.I., Jones, E.Y., Davis, S.J.

(1999) Proc Natl Acad Sci U S A 96: 4289-4294

Released	1999-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CD58) (protein)
Unique Ligands	NAG

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1CE6 \| pdb_00001ce6	Download File View File

MHC CLASS I H-2DB COMPLEXED WITH A SENDAI VIRUS NUCLEOPROTEIN PEPTIDE

Tormo, J., Jones, E.Y.

(1999) Immunity 10: 63-74

Released	1999-03-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus Sendai virus (strain Z)
Macromolecule	PROTEIN (HUMAN BETA-2 MICROGLOBULIN) (protein) PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) (protein) PROTEIN (SENDAI VIRUS NUCLEOPROTEIN) (protein)
Unique Ligands	SO4

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1D4V \| pdb_00001d4v	Download File View File

Crystal structure of trail-DR5 complex

Mongkolsapaya, J., Grimes, J.M., Stuart, D.I., Jones, E.Y., Screaton, G.R.

(1999) Nat Struct Biol 6: 1048-1053

Released	1999-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)

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1DR9 \| pdb_00001dr9	Download File View File

CRYSTAL STRUCTURE OF A SOLUBLE FORM OF B7-1 (CD80)

Ikemizu, S., Jones, E.Y., Stuart, D.I., Davis, S.J.

(2000) Immunity 12: 51-60

Released	2000-01-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	T LYMPHOCYTE ACTIVATION ANTIGEN (protein)
Unique Ligands	NAG

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1E27 \| pdb_00001e27	Download File View File

Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM1(LPPVVAKEI)

Maenaka, K., Maenaka, T., Tomiyama, H., Takiguchi, M., Stuart, D.I., Jones, E.Y.

(2000) J Immunol 165: 3260-3267

Released	2000-09-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2 MICROGLOBULIN LIGHT CHAIN (protein) HIV-1 PEPTIDE (LPPVVAKEI) (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN (protein)

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1E28 \| pdb_00001e28	Download File View File

Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM2(TAFTIPSI)

Maenaka, K., Maenaka, T., Tomiyama, H., Takiguchi, M., Stuart, D.I., Jones, E.Y.

(2000) J Immunol 165: 3260-3267

Released	2000-09-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BETA-2 MICROGLOBULIN LIGHT CHAIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN (protein) PEPTIDE (protein)

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1EMR \| pdb_00001emr	Download File View File

CRYSTAL STRUCTURE OF HUMAN LEUKEMIA INHIBITORY FACTOR (LIF)

Robinson, R.C., Heath, J.K., Hawkins, N., Samal, B., Jones, E.Y., Betzel, C.

To be published

Released	2001-03-21
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	LEUKEMIA INHIBITORY FACTOR (protein)

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1EPF \| pdb_00001epf	Download File View File

CRYSTAL STRUCTURE OF THE TWO N-TERMINAL IMMUNOGLOBULIN DOMAINS OF THE NEURAL CELL ADHESION MOLECULE (NCAM)

Kasper, C., Rasmussen, H., Kastrup, J.S., Ikemizu, S., Jones, E.Y., Berezin, V., Bock, E., Larsen, I.K.

(2000) Nat Struct Biol 7: 389-393

Released	2000-10-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (NEURAL CELL ADHESION MOLECULE) (protein)
Unique Ligands	CA