RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Kekilli, D."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 80 Structures.

Refinements

Structure Determination Methodology

experimental (80)

Scientific Name of Source Organism

	Achromobacter cycloclastes (21)
	Nonlabens marinus S1-08 (19)
	Achromobacter xylosoxidans (17)
	Halobacterium salinarum NRC-1 (9)
	Dokdonia eikasta (7)
	Bos taurus (5)
	Shewanella frigidimarina (2)

Taxonomy

	Bacteria (66)
	Archaea (9)
	Eukaryota (5)

Experimental Method

X-RAY DIFFRACTION (80)

Polymer Entity Type

Protein (80)

Refinement Resolution (Å)

	1.0 - 1.5 (25)
	1.5 - 2.0 (37)
	2.0 - 2.5 (8)
	2.5 - 3.0 (10)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (43)
	2020 - 2024 (31)

Enzyme Classification Name

Oxidoreductases (21)

Membrane Protein Annotation

	PDBTM (40)
	mpstruc (38)
	MemProtMD (32)
	OPM (2)

Symmetry Type

	Cyclic (52)
	Asymmetric (28)

SCOP Classification

	All beta proteins (21)
	All alpha proteins (19)
	Membrane and cell surface proteins and peptides (16)
	Artifacts (2)

AllSelected

1 to 25 of 80 Structures

Page 1 of 4

Sort by

Explore in 3D

4CDA \| pdb_00004cda	Download File View File

Spectroscopically-validated structure of ferric cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Dworkowski, F., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC, SO4

Explore in 3D

4CDV \| pdb_00004cdv	Download File View File

Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 100K

Kekilli, D., Dworkowski, F., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC, SO4

Explore in 3D

4CDY \| pdb_00004cdy	Download File View File

Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 160K

Kekilli, D., Dworkowski, F., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC

Explore in 3D

4CIP \| pdb_00004cip	Download File View File

Spectroscopically-validated structure of ferrous cytochrome c prime from Alcaligenes xylosoxidans, reduced using ascorbate

Kekilli, D., Dworkowski, F., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	ASC, HEC, SO4

Explore in 3D

4CJG \| pdb_00004cjg	Download File View File

Spectroscopically validated structure of the 5 coordinate proximal NO adduct of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Dworkowski, F., Fuchs, M., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC, NO

Explore in 3D

4CJO \| pdb_00004cjo	Download File View File

Spectroscopically-validated structure of ferrous cytochrome c prime from Alcaligenes xylosoxidans, reduced at 180K using X-rays

Kekilli, D., Dworkowski, F., Antonyuk, S., Hough, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1289

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC

Explore in 3D

4CX9 \| pdb_00004cx9	Download File View File

The 5-coordinate proximal NO complex of cytochrome c prime from Shewanella frigidimarina

Manole, A.A., Kekilli, D., Dobbin, P.S., Hough, M.A.

(2015) J Biol Inorg Chem 20: 675

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Shewanella frigidimarina
Macromolecule	CYTOCHROME C, CLASS II (protein)
Unique Ligands	GOL, HEC, NO, SO4

Explore in 3D

4D4N \| pdb_00004d4n	Download File View File

Nitrosyl complex of the D121A variant of cytochrome c prime from Alcaligenes xylosoxidans

Gahfoor, D.D., Kekilli, D., Abdullah, G.H., Dworkowski, F.S.N., Hassan, H.G., Wilson, M.T., Hough, M.A., Strange, R.W.

(2015) J Biol Inorg Chem 20: 949

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC, NO

Explore in 3D

4D4X \| pdb_00004d4x	Download File View File

Nitrosyl complex of the D121I variant of cytochrome c prime from Alcaligenes xylosoxidans

Gahfoor, D.D., Kekilli, D., Abdullah, G.H., Dworkowski, F.S.N., Hassan, H.G., Wilson, M.T., Hough, M.A., Strange, R.W.

(2015) J Biol Inorg Chem 20: 949

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC, NO

Explore in 3D

4ULV \| pdb_00004ulv	Download File View File

Cytochrome c prime from Shewanella frigidimarina

Manole, A.A., Kekilli, D., Dobbin, P.S., Hough, M.A.

(2015) J Biol Inorg Chem 20: 675

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Shewanella frigidimarina
Macromolecule	CYTOCHROME C, CLASS II (protein)
Unique Ligands	GOL, HEC, SO4

Explore in 3D

5AGF \| pdb_00005agf	Download File View File

Nitrosyl complex of the D121Q variant of cytochrome c prime from Alcaligenes xylosoxidans

Gahfoor, D.D., Kekilli, D., Abdullah, G.H., Dworkowski, F.S.N., Hassan, H.G., Wilson, M.T., Hough, M.A., Strange, R.W.

(2015) J Biol Inorg Chem 20: 949

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C PRIME (protein)
Unique Ligands	HEC, NO, SO4

Explore in 3D

5JLI \| pdb_00005jli	Download File View File

Nitric oxide complex of the L16A mutant of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	ASC, HEC, NO, SO4

Explore in 3D

5JP7 \| pdb_00005jp7	Download File View File

Ferrous Leu 16 Val mutant of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	HEC

Explore in 3D

5JRA \| pdb_00005jra	Download File View File

Nitric oxide complex of the L16V mutant of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	ASC, HEC, NO, SO4

Explore in 3D

5JS5 \| pdb_00005js5	Download File View File

Nitric oxide complex of the L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	ASC, HEC, NO

Explore in 3D

5JSL \| pdb_00005jsl	Download File View File

The L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous form

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	ASC, HEC, SO4

Explore in 3D

5JT4 \| pdb_00005jt4	Download File View File

L16A mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous state

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	ASC, HEC, SO4

Explore in 3D

5JUA \| pdb_00005jua	Download File View File

Nitric oxide complex of the L16I mutant of cytochrome c prime from Alcaligenes xylosoxidans

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	HEC, NO

Explore in 3D

5JVE \| pdb_00005jve	Download File View File

L16I mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous state

Kekilli, D., Strange, R.W., Hough, M.A.

(2017) Chem Sci 8: 1986-1994

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	HEC

Explore in 3D

5N8F \| pdb_00005n8f	Download File View File

Serial Cu nitrite reductase structures at elevated cryogenic temperature, 240K. Dataset 1.

Horrell, S., Kekilli, D., Hough, M., Strange, R.

(2017) IUCrJ 4: 495-505

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, SO4

Explore in 3D

5N8G \| pdb_00005n8g	Download File View File

Serial Cu nitrite reductase structures at elevated cryogenic temperature, 240K. Dataset 2.

Horrell, S., Kekilli, D., Hough, M., Strange, R.

(2017) IUCrJ 4: 495-505

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, SO4

Explore in 3D

5N8H \| pdb_00005n8h	Download File View File

Serial Cu nitrite reductase structures at elevated cryogenic temperature, 240K. Dataset 3.

Horrell, S., Kekilli, D., Hough, M., Strange, R.

(2017) IUCrJ 4: 495-505

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, SO4

Explore in 3D

5N8I \| pdb_00005n8i	Download File View File

Serial Cu nitrite reductase structures at elevated cryogenic temperature, 100K reference dataset.

Horrell, S., Kekilli, D., Hough, M., Strange, R.

(2017) IUCrJ 4: 495-505

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, MLI

Explore in 3D

5OF5 \| pdb_00005of5	Download File View File

Cu nitrite reductase serial data at varying temperatures

Horrell, S., Kekilli, D., Strange, R.W., Hough, M.A.

(2018) IUCrJ 5: 283-292

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	ACT, CU, MLI, NO2, SO4

Explore in 3D

5OF6 \| pdb_00005of6	Download File View File

Cu nitrite reductase serial data at varying temperatures 190K 0.48MGy

Horrell, S., Kekilli, D., Strange, R.W., Hough, M.A.

(2018) IUCrJ 5: 283-292

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	ACT, CU, MLI, NO, NO2, SO4

1 to 25 of 80 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4CDA | pdb_00004cda

4CDV | pdb_00004cdv

4CDY | pdb_00004cdy

4CIP | pdb_00004cip

4CJG | pdb_00004cjg

4CJO | pdb_00004cjo

4CX9 | pdb_00004cx9

4D4N | pdb_00004d4n

4D4X | pdb_00004d4x

4ULV | pdb_00004ulv

5AGF | pdb_00005agf

5JLI | pdb_00005jli

5JP7 | pdb_00005jp7

5JRA | pdb_00005jra

5JS5 | pdb_00005js5

5JSL | pdb_00005jsl

5JT4 | pdb_00005jt4

5JUA | pdb_00005jua

5JVE | pdb_00005jve

5N8F | pdb_00005n8f

5N8G | pdb_00005n8g

5N8H | pdb_00005n8h

5N8I | pdb_00005n8i

5OF5 | pdb_00005of5

5OF6 | pdb_00005of6