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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kitamuta, Y."

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This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Thermus thermophilus (2)
	Aquifex aeolicus VF5 (1)
	Thermus thermophilus HB8 (1)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

2005 - 2009 (4)

Enzyme Classification Name

	Ligases (3)
	Transferases (1)

Symmetry Type

	Cyclic (3)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (3)

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1 to 4 of 4 Structures

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2YVW \| pdb_00002yvw	Download File View File

Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5

Kitamuta, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EPU, PO4

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2YZN \| pdb_00002yzn	Download File View File

Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.

Kitamuta, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	D-alanine-D-alanine ligase (protein)
Unique Ligands	ANP

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2ZDH \| pdb_00002zdh	Download File View File

Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8

Kitamuta, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	D-alanine--D-alanine ligase (protein)
Unique Ligands	ADP, DAL, MG

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2ZDQ \| pdb_00002zdq	Download File View File

Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8

Kitamuta, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	D-alanine--D-alanine ligase (protein)
Unique Ligands	ATP, DAL

1 to 4 of 4 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2YVW | pdb_00002yvw

Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5

2YZN | pdb_00002yzn

Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.

2ZDH | pdb_00002zdh

Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8

2ZDQ | pdb_00002zdq

Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YVW | pdb_00002yvw

Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5

2YZN | pdb_00002yzn

Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.

2ZDH | pdb_00002zdh

Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8

2ZDQ | pdb_00002zdq

Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8