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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lee, M."

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Search Summary

This query matches 127 Structures.

Refinements

Structure Determination Methodology

experimental (127)

Scientific Name of Source Organism

	Homo sapiens (27)
	Escherichia coli (20)
	Escherichia coli K-12 (9)
	Helicobacter pylori 26695 (7)
	Cupriavidus pinatubonensis JMP134 (6)
	Tetronarce californica (6)
	Citrobacter freundii (5)
	Oncorhynchus keta (5)
	Salmonella enterica subsp. enterica serovar Typhimurium (5)
	Vibrio cholerae (4)

More...

Taxonomy

	Bacteria (70)
	Eukaryota (51)
	other sequences (4)
	Archaea (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (111)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (5)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (123)
	DNA (4)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (49)
	2.0 - 2.5 (34)
	2.5 - 3.0 (25)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (5)
	2005 - 2009 (28)
	2010 - 2014 (31)
	2015 - 2019 (20)
	2020 - 2024 (36)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (41)
	Lyases (10)
	Oxidoreductases (8)
	Transferases (6)

Membrane Protein Annotation

	PDBTM (10)
	mpstruc (10)
	MemProtMD (9)
	OPM (5)

Symmetry Type

	Asymmetric (57)
	Cyclic (56)
	Dihedral (14)
	Helical (2)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a/b) (32)
	Alpha and beta proteins (a+b) (9)
	Multi-domain proteins (alpha and beta) (3)
	Artifacts (6)
	All alpha proteins (2)
	Membrane and cell surface proteins and peptides (2)
	Small proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 127 Structures

Page 1 of 6

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1A50 \| pdb_00001a50	Download File View File

CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH 5-FLUOROINDOLE PROPANOL PHOSPHATE

Schneider, T.R., Gerhardt, E., Lee, M., Liang, P.-H., Anderson, K.S., Schlichting, I.

(1998) Biochemistry 37: 5394-5406

Released	1999-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (ALPHA CHAIN) (protein) TRYPTOPHAN SYNTHASE (BETA CHAIN) (protein)
Unique Ligands	FIP, NA, PLP

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1A5S \| pdb_00001a5s	Download File View File

CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH 5-FLUOROINDOLE PROPANOL PHOSPHATE AND L-SER BOUND AS AMINO ACRYLATE TO THE BETA SITE

Schneider, T.R., Gerhardt, E., Lee, M., Liang, P.-H., Anderson, K.S., Schlichting, I.

(1998) Biochemistry 37: 5394-5406

Released	1999-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (ALPHA CHAIN) (protein) TRYPTOPHAN SYNTHASE (BETA CHAIN) (protein)
Unique Ligands	FIP, NA, PLP, SER

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1B0S \| pdb_00001b0s	Download File View File

BINDING OF AR-1-144, A TRI-IMIDAZOLE DNA MINOR GROOVE BINDER, TO CCGG SEQUENCE ANALYZED BY NMR SPECTROSCOPY

Yang, X.-L., Kaenzig, C., Lee, M., Wang, A.H.-J.

(1999) Eur J Biochem 263: 646-655

Released	1999-08-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPAPAPCPCPGPGPTPTPC)-3') (nucleic acid)
Unique Ligands	AR1

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1CYZ \| pdb_00001cyz	Download File View File

NMR STRUCTURE OF THE GAACTGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX

Yang, X.-L., Hubbard IV, R.B., Lee, M., Tao, Z.-F., Sugiyama, H., Wang, A.H.-J.

(1999) Nucleic Acids Res 27: 4183-4190

Released	1999-09-14
Method	SOLUTION NMR
Macromolecule	5'-D(GPAPAPCPTPGPGPTPTPC)-3' (nucleic acid)
Unique Ligands	AR1

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1FMQ \| pdb_00001fmq	Download File View File

Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCG

Simpson, I.J., Lee, M., Kumar, A., Boykin, D.W., Neidle, S.

(2000) Bioorg Med Chem Lett 10: 2593-2597

Released	2000-09-11
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	D34, MG

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1FMS \| pdb_00001fms	Download File View File

Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)

Simpson, I.J., Lee, M., Kumar, A., Boykin, D.W., Neidle, S.

(2000) Bioorg Med Chem Lett 10: 2593-2597

Released	2000-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	D35, MG

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1M35 \| pdb_00001m35	Download File View File

Aminopeptidase P from Escherichia coli

Graham, S.C., Lee, M., Freeman, H.C., Guss, J.M.

(2003) Acta Crystallogr D Biol Crystallogr 59: 897-902

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	AMINOPEPTIDASE P (protein)
Unique Ligands	MN

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1N0W \| pdb_00001n0w	Download File View File

Crystal structure of a RAD51-BRCA2 BRC repeat complex

Pellegrini, L., Yu, D.S., Lo, T., Anand, S., Lee, M., Blundell, T.L., Venkitaraman, A.R.

(2002) Nature 420: 287-293

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ARTIFICIAL GLY-SER-MSE-GLY PEPTIDE (protein) Breast cancer type 2 susceptibility protein (protein) DNA repair protein RAD51 homolog 1 (protein) peptide linker (protein)
Unique Ligands	CL, EDO, MG

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1OV8 \| pdb_00001ov8	Download File View File

Auracyanin B structure in space group, P65

Lee, M., Maher, M.J., Freeman, H.C., Guss, J.M.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1545-1550

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chloroflexus aurantiacus
Macromolecule	Auracyanin B (protein)
Unique Ligands	CL, CU, SO4

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1WVK \| pdb_00001wvk	Download File View File

NMR Solution Structure of the Partially Disordered Protein At2g23090 from Arabidopsis thaliana

Tyler, R.C., Tonelli, M., Lee, M., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2005-01-04
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	At2g23090/F21P24.15 (protein)

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1XGE \| pdb_00001xge	Download File View File

Dihydroorotase from Escherichia coli: Loop Movement and Cooperativity between subunits

Lee, M., Chan, C.W., Guss, J.M., Christopherson, R.I., Maher, M.J.

(2005) J Mol Biology 348: 523-533

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Dihydroorotase (protein)
Unique Ligands	DOR, NCD, ZN

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2AAN \| pdb_00002aan	Download File View File

Auracyanin A: A "blue" copper protein from the green thermophilic photosynthetic bacterium,chloroflexus aurantiacus

Lee, M., Guss, J.M., Freeman, H.C.

To be published

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Chloroflexus aurantiacus
Macromolecule	auracyanin A (protein)
Unique Ligands	CU, SO4

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2E25 \| pdb_00002e25	Download File View File

The Crystal Structure of the T109S mutant of E. coli Dihydroorotase complexed with an inhibitor 5-fluoroorotate

Lee, M., Maher, M.J., Guss, J.M.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 154-161

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Dihydroorotase (protein)
Unique Ligands	FOT, ZN

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2EG6 \| pdb_00002eg6	Download File View File

The crystal structure of the ligand-free dihydroorotase from E. coli

Lee, M., Maher, M.J., Guss, J.M.

(2007) J Mol Biology 370: 812-825

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Dihydroorotase (protein)
Unique Ligands	ZN

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2EG7 \| pdb_00002eg7	Download File View File

The crystal structure of E. coli dihydroorotase complexed with HDDP

Lee, M., Maher, M.J., Guss, J.M.

(2007) J Mol Biology 370: 812-825

Released	2007-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Dihydroorotase (protein)
Unique Ligands	OTD, ZN

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2EG8 \| pdb_00002eg8	Download File View File

The crystal structure of E. coli dihydroorotase complexed with 5-fluoroorotic acid

Lee, M., Maher, M.J., Guss, J.M.

(2007) J Mol Biology 370: 812-825

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Dihydroorotase (protein)
Unique Ligands	FOT, ZN

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2MXB \| pdb_00002mxb	Download File View File

Structure of the transmembrane domain of the mouse erythropoietin receptor

Li, Q., Wong, Y., Lee, M., Kang, C.

(2015) Sci Rep 5: 13586-13586

Released	2015-09-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Erythropoietin receptor (protein)

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2RGT \| pdb_00002rgt	Download File View File

Crystal Structure of Lhx3 LIM domains 1 and 2 with the binding domain of Isl1

Bhati, M., Lee, M., Guss, J.M., Matthews, J.M.

(2008) EMBO J 27: 2018-2029

Released	2008-08-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Fusion of LIM/homeobox protein Lhx3, linker, Insulin gene enhancer protein ISL-1 (protein)
Unique Ligands	ZN

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2WSY \| pdb_00002wsy	Download File View File

CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE

Schneider, T.R., Gerhardt, E., Lee, M., Liang, P.-H., Anderson, K.S., Schlichting, I.

(1998) Biochemistry 37: 5394-5406

Released	1999-03-30
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (protein)
Unique Ligands	NA, PLP

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2Y28 \| pdb_00002y28	Download File View File

crystal structure of Se-Met AmpD derivative

Carrasco-Lopez, C., Rojas-Altuve, A., Zhang, W., Hesek, D., Lee, M., Barbe, S., Andre, I., Silva-Martin, N., Martinez-Ripoll, M., Mobashery, S., Hermoso, J.A.

(2011) J Biological Chem 286: 31714

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Citrobacter freundii
Macromolecule	1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD (protein)
Unique Ligands	ZN

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2Y2B \| pdb_00002y2b	Download File View File

crystal structure of AmpD in complex with reaction products

Carrasco-Lopez, C., Rojas-Altuve, A., Zhang, W., Hesek, D., Lee, M., Barbe, S., Andre, I., Silva-Martin, N., Martinez-Ripoll, M., Mobashery, S., Hermoso, J.A.

(2011) J Biological Chem 286: 31714

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Citrobacter freundii
Macromolecule	1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD (protein)
Unique Ligands	AH0, MHI, ZN

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2Y2C \| pdb_00002y2c	Download File View File

crystal structure of AmpD Apoenzyme

Carrasco-Lopez, C., Rojas-Altuve, A., Zhang, W., Hesek, D., Lee, M., Barbe, S., Andre, I., Silva-Martin, N., Martinez-Ripoll, M., Mobashery, S., Hermoso, J.A.

(2011) J Biological Chem 286: 31714

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Citrobacter freundii
Macromolecule	1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD (protein)

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2Y2D \| pdb_00002y2d	Download File View File

crystal structure of AmpD holoenzyme

Carrasco-Lopez, C., Rojas-Altuve, A., Zhang, W., Hesek, D., Lee, M., Barbe, S., Andre, I., Silva-Martin, N., Martinez-Ripoll, M., Mobashery, S., Hermoso, J.A.

(2011) J Biological Chem 286: 31714

Released	2011-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Citrobacter freundii
Macromolecule	1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD (protein)
Unique Ligands	ZN

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2Y2E \| pdb_00002y2e	Download File View File

crystal structure of AmpD grown at pH 5.5

Carrasco-Lopez, C., Rojas-Altuve, A., Zhang, W., Hesek, D., Lee, M., Barbe, S., Andre, I., Silva-Martin, N., Martinez-Ripoll, M., Mobashery, S., Hermoso, J.A.

(2011) J Biological Chem 286: 31714

Released	2011-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Citrobacter freundii
Macromolecule	1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD (protein)
Unique Ligands	ZN