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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Liu, L."

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Search Summary

This query matches 467 Structures.

Refinements

Structure Determination Methodology

experimental (467)

Scientific Name of Source Organism

	Homo sapiens (114)
	synthetic construct (52)
	Arabidopsis thaliana (38)
	Tequatrovirus T4 (23)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Middle East respiratory syndrome-related coronavirus (20)
	Mus musculus (19)
	Synechocystis sp. PCC 6803 substr. Kazusa (14)
	Escherichia coli (10)
	Pseudomonas aeruginosa PAO1 (9)

More...

Taxonomy

	Eukaryota (225)
	Bacteria (142)
	Riboviria (57)
	other sequences (53)
	Duplodnaviria (27)
	Archaea (5)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (373)
	ELECTRON MICROSCOPY (91)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (458)
	DNA (49)
	RNA (38)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (29)
	1.5 - 2.0 (134)
	2.0 - 2.5 (95)
	2.5 - 3.0 (78)
	3.0 - 3.5 (81)
	3.5 - 4.0 (38)
	4.0 - 4.5 (4)
	> 4.5 (4)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (37)
	2010 - 2014 (46)
	2015 - 2019 (97)
	2020 - 2024 (255)
	2025 - 2029 (22)

Enzyme Classification Name

	Hydrolases (148)
	Transferases (54)
	Oxidoreductases (34)
	Isomerases (17)
	Lyases (10)
	Ligases (6)

Membrane Protein Annotation

	PDBTM (22)
	mpstruc (24)
	OPM (16)
	MemProtMD (5)

Symmetry Type

	Asymmetric (283)
	Cyclic (156)
	Dihedral (28)
	Octahedral (1)
	Tetrahedral (2)
	Helical (1)

SCOP Classification

	All beta proteins (29)
	Alpha and beta proteins (a+b) (49)
	Alpha and beta proteins (a/b) (23)
	Artifacts (16)
	All alpha proteins (6)
	Small proteins (3)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 467 Structures

Page 1 of 19

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1FQQ \| pdb_00001fqq	Download File View File

SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN-2

Sawai, M.V., Jia, H.P., Liu, L., Aseyev, V., Wiencek, J.M., McCray Jr., P.B., Ganz, T., Kearney, W.R., Tack, B.F.

(2001) Biochemistry 40: 3810-3816

Released	2001-04-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	BETA-DEFENSIN-2 (protein)

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1G86 \| pdb_00001g86	Download File View File

CHARCOT-LEYDEN CRYSTAL PROTEIN/N-ETHYLMALEIMIDE COMPLEX

Ackerman, S.J., Liu, L., Kwatia, M.A., Savage, M.P., Leonidas, D.D., Swaminathan, G.J., Acharya, K.R.

(2002) J Biological Chem 277: 14859-14868

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	CHARCOT-LEYDEN CRYSTAL PROTEIN (protein)
Unique Ligands	NEQ

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1HDK \| pdb_00001hdk	Download File View File

Charcot-Leyden Crystal Protein - pCMBS Complex

Ackerman, S.J., Savage, M.P., Liu, L., Leonidas, D.D., Kwatia, M.A., Swaminathan, G.J., Acharya, K.R.

(2002) J Biological Chem 277: 14859

Released	2001-11-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL LYSOPHOSPHOLIPASE (protein)
Unique Ligands	PMB

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1IU9 \| pdb_00001iu9	Download File View File

Crystal structure of the C-terminal domain of aspartate racemase from Pyrococcus horikoshii OT3

Liu, L., Iwata, K., Yohda, M., Miki, K.

(2002) FEBS Lett 528: 114-118

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	aspartate racemase (protein)
Unique Ligands	CA

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1IUA \| pdb_00001iua	Download File View File

Ultra-high resolution structure of HiPIP from Thermochromatium tepidum

Liu, L., Nogi, T., Kobayashi, M., Nozawa, T., Miki, K.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1085-1091

Released	2002-03-20
Method	X-RAY DIFFRACTION 0.8 Å
Organisms	Thermochromatium tepidum
Macromolecule	High-potential iron-sulfur protein (protein)
Unique Ligands	SF4, SO4

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1KZI \| pdb_00001kzi	Download File View File

Crystal Structure of EcTS/dUMP/THF Complex

Fritz, T.A., Liu, L., Finer-Moore, J.S., Stroud, R.M.

(2002) Biochemistry 41: 7021-7029

Released	2002-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	CO3, DTT, DTU, GOL, THG, UMP

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1KZJ \| pdb_00001kzj	Download File View File

Crystal Structure of EcTS W80G/dUMP/CB3717 Complex

Fritz, T.A., Liu, L., Finer-Moore, J.S., Stroud, R.M.

(2002) Biochemistry 41: 7021-7029

Released	2002-07-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	CB3, UMP

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1M7Q \| pdb_00001m7q	Download File View File

Crystal structure of p38 MAP kinase in complex with a dihydroquinazolinone inhibitor

Stelmach, J.E., Liu, L., Patel, S.B., Pivnichny, J.V., Scapin, G., Singh, S., Hop, C.E.C.A., Wang, Z., Cameron, P.M., Nichols, E.A., O'Keefe, S.J., O'Neill, E.A., Schmatz, D.M., Schwartz, C.D., Thompson, C.M., Zaller, D.M., Doherty, J.B.

(2003) Bioorg Med Chem Lett 13: 277-280

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	DQO, SO4

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1T2L \| pdb_00001t2l	Download File View File

Three Crystal Structures of Human Coactosin-like Protein

Liu, L., Wei, Z., Chen, Z., Wang, Y., Gong, W.

(2004) J Mol Biology 344: 317-323

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1T3X \| pdb_00001t3x	Download File View File

Three Crystal Structures of Human Coactosin-like Protein

Liu, L., Wei, Z., Chen, Z., Wang, Y.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1T3Y \| pdb_00001t3y	Download File View File

Three Crystal Structures of Human Coactosin-like Protein

Liu, L., Wei, Z., Chen, Z., Wang, Y.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1T8P \| pdb_00001t8p	Download File View File

Crystal structure of Human erythrocyte 2,3-bisphosphoglycerate mutase

Wang, Y., Wei, Z., Bian, Q., Cheng, Z., Wan, M., Liu, L., Gong, W.

(2004) J Biological Chem 279: 39132-39138

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)

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1VPR \| pdb_00001vpr	Download File View File

Crystal structure of a luciferase domain from the dinoflagellate Lingulodinium polyedrum

Schultz, L.W., Liu, L., Cegielski, M., Hastings, J.W.

(2005) Proc Natl Acad Sci U S A 102: 1378-1383

Released	2005-02-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lingulodinium polyedra
Macromolecule	luciferase (protein)

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1YFK \| pdb_00001yfk	Download File View File

Crystal structure of human B type phosphoglycerate mutase

Wang, Y., Wei, Z., Liu, L., Gong, W.

(2005) Biochem Biophys Res Commun 331: 1207-1215

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CIT, CL

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1YJX \| pdb_00001yjx	Download File View File

Crystal structure of human B type phosphoglycerate mutase

Wang, Y., Wei, Z., Liu, L., Gong, W.

(2005) Biochem Biophys Res Commun 331: 1207-1215

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CIT, CL

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2B3O \| pdb_00002b3o	Download File View File

Crystal structure of human tyrosine phosphatase SHP-1

Yang, J., Liu, L., He, D., Song, X., Liang, X., Zhao, Z.J., Zhou, G.W.

(2003) J Biological Chem 278: 6516-6520

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase, non-receptor type 6 (protein)

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2B3R \| pdb_00002b3r	Download File View File

Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2

Liu, L., Song, X., He, D., Komma, C., Kita, A., Verbasius, J.V., Bellamy, H., Miki, K., Czech, M.P., Zhou, G.W.

(2006) J Biological Chem 281: 4254-4260

Released	2005-12-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (protein)
Unique Ligands	SO4

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2B7D \| pdb_00002b7d	Download File View File

Factor VIIa Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, and Efficacy in a Baboon Thrombosis Model

Young, W.B., Mordenti, J., Torkelson, S., Shrader, W.D., Kolesnikov, A., Rai, R., Liu, L., Hu, H., Leahy, E.M., Green, M.J., Sprengeler, P.A., Katz, B.A., Yu, C., Janc, J.W., Elrod, K.C., Marzec, U.M., Hanson, S.R.

(2006) Bioorg Med Chem Lett 16: 2037-2041

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	C1B

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2F90 \| pdb_00002f90	Download File View File

Crystal structure of bisphosphoglycerate mutase in complex with 3-phosphoglycerate and AlF4-

Wang, Y., Liu, L., Wei, Z., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	3PG, ALF

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2LQ6 \| pdb_00002lq6	Download File View File

Solution structure of BRD1 PHD2 finger

Liu, L., Wu, J.

(2012) J Struct Biol 180: 165-173

Released	2012-10-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 1 (protein)
Unique Ligands	ZN

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2PL5 \| pdb_00002pl5	Download File View File

Crystal Structure of Homoserine O-acetyltransferase from Leptospira interrogans

Liu, L., Wang, M., Wang, Y., Wei, Z., Xu, H., Gong, W.

(2007) Biochem Biophys Res Commun 363: 1050-1056

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Leptospira interrogans
Macromolecule	Homoserine O-acetyltransferase (protein)
Unique Ligands	GOL

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2VL7 \| pdb_00002vl7	Download File View File

Structure of S. tokodaii Xpd4

Naismith, J.H., Johnson, K.A., Oke, M., McMahon, S.A., Liu, L., White, M.F., Zawadski, M., Carter, L.G.

(2008) Cell 133: 801

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	XPD (protein)
Unique Ligands	PO4

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2YKR \| pdb_00002ykr	Download File View File

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Guo, Q., Yuan, Y., Xu, Y., Feng, B., Liu, L., Chen, K., Lei, J., Gao, N.

(2011) Proc Natl Acad Sci U S A 108: 13100

Released	2011-08-24
Method	ELECTRON MICROSCOPY 9.8 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1

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3CIG \| pdb_00003cig	Download File View File

Crystal structure of mouse TLR3 ectodomain

Liu, L., Botos, I., Wang, Y., Leonard, J.N., Shiloach, J., Segal, D.M., Davies, D.R.

(2008) Science 320: 379-381

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Mus musculus
Macromolecule	Toll-like receptor 3 (protein)
Unique Ligands	FUC, NAG
Unique branched monosaccharides	BMA, FUL, MAN, NAG, NDG

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3CIY \| pdb_00003ciy	Download File View File

Mouse Toll-like receptor 3 ectodomain complexed with double-stranded RNA

Liu, L., Botos, I., Wang, Y., Leonard, J.N., Shiloach, J., Segal, D.M., Davies, D.R.

(2008) Science 320: 379-381

Released	2008-05-06
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Mus musculus
Macromolecule	Toll-like receptor 3 (protein) 46-MER (nucleic acid)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG, NDG

1 to 25 of 467 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FQQ | pdb_00001fqq

1G86 | pdb_00001g86

1HDK | pdb_00001hdk

1IU9 | pdb_00001iu9

1IUA | pdb_00001iua

1KZI | pdb_00001kzi

1KZJ | pdb_00001kzj

1M7Q | pdb_00001m7q

1T2L | pdb_00001t2l

1T3X | pdb_00001t3x

1T3Y | pdb_00001t3y

1T8P | pdb_00001t8p

1VPR | pdb_00001vpr

1YFK | pdb_00001yfk

1YJX | pdb_00001yjx

2B3O | pdb_00002b3o

2B3R | pdb_00002b3r

2B7D | pdb_00002b7d

2F90 | pdb_00002f90

2LQ6 | pdb_00002lq6

2PL5 | pdb_00002pl5

2VL7 | pdb_00002vl7

2YKR | pdb_00002ykr

3CIG | pdb_00003cig

3CIY | pdb_00003ciy