RCSB PDB: Search

2JLN \| pdb_00002jln	Download File View File

Structure of Mhp1, a nucleobase-cation-symport-1 family transporter

Weyand, S., Shimamura, T., Yajima, S., Suzuki, S., Mirza, O., Krusong, K., Carpenter, E.P., Rutherford, N.G., Hadden, J.M., O'Reilly, J., Ma, P., Saidijam, M., Patching, S.G., Hope, R.J., Norbertczak, H.T., Roach, P.C.J., Iwata, S., Henderson, P.J.F., Cameron, A.D.

(2008) Science 322: 709

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Microbacterium maritypicum
Macromolecule	MHP1 (protein)
Unique Ligands	HG, NA

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4CO7 \| pdb_00004co7	Download File View File

Crystal structure of human GATE-16

Weiergraeber, O.H., Ma, P., Willbold, D.

(2015) Biochemistry 54: 5469

Released	2015-01-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2 (protein)

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4MND \| pdb_00004mnd	Download File View File

Crystal structure of Archaeoglobus fulgidus IPCT-DIPPS bifunctional membrane protein

Nogly, P., Gushchin, I., Remeeva, A., Esteves, A.M., Ishchenko, A., Ma, P., Grudinin, S., Borges, N., Round, E., Moraes, I., Borshchevskiy, V., Santos, H., Gordeliy, V., Archer, M.

(2014) Nat Commun 5: 4169-4169

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	CTP L-myo-inositol-1-phosphate cytidylyltransferase/CDP-L-myo-inositol myo-inositolphosphotransferase (protein)
Unique Ligands	LFA, MG

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4XNK \| pdb_00004xnk	Download File View File

X-ray structure of AlgE1

Ma, P., Huang, C.Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1238-1256

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, CA, LDA, NA, PE5

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4XNL \| pdb_00004xnl	Download File View File

X-ray structure of AlgE2

Ma, P., Huang, C.Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1238-1256

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, 78N, CA, LDA, PE5

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4XOF \| pdb_00004xof	Download File View File

Observing the overall rocking motion of a protein in a crystal - Orthorhombic Ubiquitin crystals without Zinc.

Coquelle, N., Ma, P., Schanda, P., Colletier, J.P.

(2015) Nat Commun 6: 8361-8361

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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4XOK \| pdb_00004xok	Download File View File

Observing the overall rocking motion of a protein in a crystal.

Coquelle, N., Ma, P., Schanda, P., Colletier, J.P.

(2015) Nat Commun 6: 8361-8361

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)
Unique Ligands	ZN

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5D5D \| pdb_00005d5d	Download File View File

In meso in situ serial X-ray crystallography structure of AlgE at 100 K

Ma, P., Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, CA, LDA, MES, NA, PE5

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5D6I \| pdb_00005d6i	Download File View File

DgkA - CIM

Ma, P., Caffrey, M.

(2017) Nat Protoc 12: 1745-1762

Released	2016-08-17
Method	X-RAY DIFFRACTION 3.091 Å
Organisms	Escherichia coli
Macromolecule	Diacylglycerol kinase (protein)

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5D6K \| pdb_00005d6k	Download File View File

PepT - CIM

Ma, P., Caffrey, M.

(2017) Nat Protoc 12: 1745-1762

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	97M, 97N, PO4

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5D6L \| pdb_00005d6l	Download File View File

beta2AR-T4L - CIM

Ma, P., Caffrey, M.

(2017) Nat Protoc 12: 1745-1762

Released	2016-08-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor (protein)
Unique Ligands	12P, ACM, BU1, CAU, CLR, PLM, SO4
Unique branched monosaccharides	BGC, GLC

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5IYU \| pdb_00005iyu	Download File View File

AlgE_CIM

Ma, P., Weichert, D.

(2017) Nat Protoc 12: 1745-1762

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	LDA, NA, OLC, PE5

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6FUF \| pdb_00006fuf	Download File View File

Crystal structure of the rhodopsin-mini-Go complex

Tsai, C.-J., Weinert, T., Muehle, J., Pamula, F., Nehme, R., Flock, T., Nogly, P., Edwards, P.C., Carpenter, B., Gruhl, T., Ma, P., Deupi, X., Standfuss, J., Tate, C.G., Schertler, G.F.X.

(2018) Sci Adv 4: eaat7052-eaat7052

Released	2018-10-03
Method	X-RAY DIFFRACTION 3.117 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(o) subunit alpha (protein) Rhodopsin (protein)
Unique Ligands	NAG, RET

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6IY1 \| pdb_00006iy1	Download File View File

Structure of human Ras-related protein Rab11

Ma, P., Li, S., Li, J.

To be published

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein)
Unique Ligands	GDP

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7O8F \| pdb_00007o8f	Download File View File

NmHR dark state structure determined by serial femtosecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8G \| pdb_00007o8g	Download File View File

NmHR light state structure at 10 ps after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8H \| pdb_00007o8h	Download File View File

NmHR light state structure at 10 ns after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8I \| pdb_00007o8i	Download File View File

NmHR light state structure at 1 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8J \| pdb_00007o8j	Download File View File

NmHR light state structure at 20 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8K \| pdb_00007o8k	Download File View File

NmHR light state structure at 300 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8L \| pdb_00007o8l	Download File View File

NmHR dark state structure determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8M \| pdb_00007o8m	Download File View File

NmHR light state structure at 2.5 ms (0 - 5 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8N \| pdb_00007o8n	Download File View File

NmHR light state structure at 7.5 ms (5 - 10 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8O \| pdb_00007o8o	Download File View File

NmHR light state structure at 12.5 ms (10 - 15 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8P \| pdb_00007o8p	Download File View File

NmHR light state structure at 17.5 ms (15 - 20 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2JLN | pdb_00002jln

4CO7 | pdb_00004co7

4MND | pdb_00004mnd

4XNK | pdb_00004xnk

4XNL | pdb_00004xnl

4XOF | pdb_00004xof

4XOK | pdb_00004xok

5D5D | pdb_00005d5d

5D6I | pdb_00005d6i

5D6K | pdb_00005d6k

5D6L | pdb_00005d6l

5IYU | pdb_00005iyu

6FUF | pdb_00006fuf

6IY1 | pdb_00006iy1

7O8F | pdb_00007o8f

7O8G | pdb_00007o8g

7O8H | pdb_00007o8h

7O8I | pdb_00007o8i

7O8J | pdb_00007o8j

7O8K | pdb_00007o8k

7O8L | pdb_00007o8l

7O8M | pdb_00007o8m

7O8N | pdb_00007o8n

7O8O | pdb_00007o8o

7O8P | pdb_00007o8p