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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Makhatadze, G.I."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (12)
	Gallus gallus (2)
	Saccharomyces cerevisiae (2)

Taxonomy

	Eukaryota (14)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (15)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (18)
	2010 - 2014 (1)

Enzyme Classification Name

	Lyases (9)
	Hydrolases (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (3)

SCOP Classification

	Artifacts (9)
	Designed proteins (6)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

AllSelected

1 to 20 of 20 Structures

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1OZO \| pdb_00001ozo	Download File View File

Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy

Lee, Y.-C., Volk, D.E., Thiviyanathan, V., Kleerekoper, Q., Gribenko, A.V., Zhang, S., Gorenstein, D.G., Makhatadze, G.I., Luxon, B.A.

(2004) J Biomol NMR 29: 399-402

Released	2004-04-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	S-100P protein (protein)

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1YIW \| pdb_00001yiw	Download File View File

X-ray Crystal Structure of a Chemically Synthesized Ubiquitin

Bang, D., Makhatadze, G.I., Tereshko, V., Kossiakoff, A.A., Kent, S.B.

(2005) Angew Chem Int Ed Engl 44: 3852-3856

Released	2005-06-14
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Gallus gallus
Macromolecule	Ubiquitin (protein)
Unique Ligands	CD, CL

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1YJ1 \| pdb_00001yj1	Download File View File

X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin

Bang, D., Makhatadze, G.I., Tereshko, V., Kossiakoff, A.A., Kent, S.B.

(2005) Angew Chem Int Ed Engl 44: 3852-3856

Released	2005-06-14
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	Ubiquitin (protein)
Unique Ligands	CD, CL

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1ZW7 \| pdb_00001zw7	Download File View File

Elimination of the C-cap in Ubiquitin Structure, Dynamics and Thermodynamic Consequences

Ermolenko, D.N., Dangi, B., Gronenborn, A.M., Makhatadze, G.I.

(2007) Biophys Chem 126: 25-35

Released	2006-05-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin (protein)

Explore in 3D

2FCM \| pdb_00002fcm	Download File View File

X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin with a Cubic Space Group

Bang, D., Gribenko, A.V., Tereshko, V., Kossiakoff, A.A., Kent, S.B., Makhatadze, G.I.

(2006) Nat Chem Biol 2: 139-143

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	Ubiquitin (protein)
Unique Ligands	ACT, CD

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2FCN \| pdb_00002fcn	Download File View File

X-ray Crystal Structure of a Chemically Synthesized [D-Val35]Ubiquitin with a Cubic Space Group

Bang, D., Gribenko, A.V., Tereshko, V., Kossiakoff, A.A., Kent, S.B., Makhatadze, G.I.

(2006) Nat Chem Biol 2: 139-143

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	Ubiquitin (protein)
Unique Ligands	ACT, CD

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2FCQ \| pdb_00002fcq	Download File View File

X-ray Crystal Structure of a Chemically Synthesized Ubiquitin with a Cubic Space Group

Bang, D., Gribenko, A.V., Tereshko, V., Kossiakoff, A.A., Kent, S.B., Makhatadze, G.I.

(2006) Nat Chem Biol 2: 139-143

Released	2006-01-31
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Gallus gallus
Macromolecule	Ubiquitin (protein)
Unique Ligands	CD

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2FCS \| pdb_00002fcs	Download File View File

X-ray Crystal Structure of a Chemically Synthesized [L-Gln35]Ubiquitin with a Cubic Space Group

Bang, D., Gribenko, A.V., Tereshko, V., Kossiakoff, A.A., Kent, S.B., Makhatadze, G.I.

(2006) Nat Chem Biol 2: 139-143

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	Ubiquitin (protein)
Unique Ligands	ACT, CD, SO4

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2K7J \| pdb_00002k7j	Download File View File

Human Acylphosphatase(AcPh) surface charge-optimized

Gribenko, A.V., Patel, M.M., Liu, J., McCallum, S.A., Wang, C., Makhatadze, G.I.

(2009) Proc Natl Acad Sci U S A 106: 2601-2606

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Acylphosphatase-1 (protein)

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2K7K \| pdb_00002k7k	Download File View File

Human Acylphosphatase (AcPh) common type

Gribenko, A.V., Patel, M.M., Liu, J., McCallum, S.A., Wang, C., Makhatadze, G.I.

(2009) Proc Natl Acad Sci U S A 106: 2601-2606

Released	2009-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Acylphosphatase-1 (protein)

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2KDI \| pdb_00002kdi	Download File View File

Solution structure of a Ubiquitin/UIM fusion protein

Sgourakis, N.G., Patel, M.M., Garcia, A.E., Makhatadze, G.I., McCallum, S.A.

(2010) J Mol Biology 396: 1128-1144

Released	2010-02-09
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein (protein)

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3EP3 \| pdb_00003ep3	Download File View File

Human AdoMetDC D174N mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

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3EP4 \| pdb_00003ep4	Download File View File

Human AdoMetDC E256Q mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

Explore in 3D

3EP5 \| pdb_00003ep5	Download File View File

Human AdoMetDC E178Q mutant with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS, URE

Explore in 3D

3EP6 \| pdb_00003ep6	Download File View File

Human AdoMetDC D174N mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

Explore in 3D

3EP7 \| pdb_00003ep7	Download File View File

Human AdoMetDC E256Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

Explore in 3D

3EP8 \| pdb_00003ep8	Download File View File

Human AdoMetDC E178Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, SMM

Explore in 3D

3EP9 \| pdb_00003ep9	Download File View File

Human AdoMetDC with no putrescine bound

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PYR, TRS

Explore in 3D

3EPA \| pdb_00003epa	Download File View File

Human AdoMetDC E178Q mutant complexed with putrescine

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, PYR, TRS

Explore in 3D

3EPB \| pdb_00003epb	Download File View File

Human AdoMetDC E256Q mutant complexed with putrescine

Bale, S., Lopez, M.M., Makhatadze, G.I., Fang, Q., Pegg, A.E., Ealick, S.E.

(2008) Biochemistry 47: 13404-13417

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine decarboxylase alpha chain (protein) S-adenosylmethionine decarboxylase beta chain (protein)
Unique Ligands	PUT, PYR

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1OZO | pdb_00001ozo

Three-dimensional solution structure of apo-S100P protein determined by NMR spectroscopy

1YIW | pdb_00001yiw

X-ray Crystal Structure of a Chemically Synthesized Ubiquitin

1YJ1 | pdb_00001yj1

X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin

1ZW7 | pdb_00001zw7

Elimination of the C-cap in Ubiquitin Structure, Dynamics and Thermodynamic Consequences

2FCM | pdb_00002fcm

X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin with a Cubic Space Group

2FCN | pdb_00002fcn

X-ray Crystal Structure of a Chemically Synthesized [D-Val35]Ubiquitin with a Cubic Space Group

2FCQ | pdb_00002fcq

X-ray Crystal Structure of a Chemically Synthesized Ubiquitin with a Cubic Space Group

2FCS | pdb_00002fcs

X-ray Crystal Structure of a Chemically Synthesized [L-Gln35]Ubiquitin with a Cubic Space Group

2K7J | pdb_00002k7j

Human Acylphosphatase(AcPh) surface charge-optimized

2K7K | pdb_00002k7k

Human Acylphosphatase (AcPh) common type

2KDI | pdb_00002kdi

Solution structure of a Ubiquitin/UIM fusion protein

3EP3 | pdb_00003ep3

Human AdoMetDC D174N mutant with no putrescine bound

3EP4 | pdb_00003ep4

Human AdoMetDC E256Q mutant with no putrescine bound

3EP5 | pdb_00003ep5

Human AdoMetDC E178Q mutant with no putrescine bound

3EP6 | pdb_00003ep6

Human AdoMetDC D174N mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

3EP7 | pdb_00003ep7

Human AdoMetDC E256Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

3EP8 | pdb_00003ep8

Human AdoMetDC E178Q mutant complexed with S-Adenosylmethionine methyl ester and no putrescine bound

3EP9 | pdb_00003ep9

Human AdoMetDC with no putrescine bound

3EPA | pdb_00003epa

Human AdoMetDC E178Q mutant complexed with putrescine

3EPB | pdb_00003epb

Human AdoMetDC E256Q mutant complexed with putrescine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1OZO | pdb_00001ozo

1YIW | pdb_00001yiw

1YJ1 | pdb_00001yj1

1ZW7 | pdb_00001zw7

2FCM | pdb_00002fcm

2FCN | pdb_00002fcn

2FCQ | pdb_00002fcq

2FCS | pdb_00002fcs

2K7J | pdb_00002k7j

2K7K | pdb_00002k7k

2KDI | pdb_00002kdi

3EP3 | pdb_00003ep3

3EP4 | pdb_00003ep4

3EP5 | pdb_00003ep5

3EP6 | pdb_00003ep6

3EP7 | pdb_00003ep7

3EP8 | pdb_00003ep8

3EP9 | pdb_00003ep9

3EPA | pdb_00003epa

3EPB | pdb_00003epb