RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Nascimento, A.S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (9)
	Trichoderma harzianum (5)
	Leptospira interrogans (2)
	Trichoderma reesei (2)
	Bacillus licheniformis DSM 13 = ATCC 14580 (1)
	Bifidobacterium adolescentis ATCC 15703 (1)
	Gallus gallus (1)
	Rattus norvegicus (1)
	Rhodothermus marinus (1)
	Roystonea regia (1)

More...

Taxonomy

	Eukaryota (19)
	Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (6)
	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (8)
	Oxidoreductases (3)
	Lyases (2)

Symmetry Type

	Asymmetric (21)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	All beta proteins (6)
	All alpha proteins (10)
	Alpha and beta proteins (a/b) (5)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 26 Structures

Page 1 of 2

Sort by

Explore in 3D

2H77 \| pdb_00002h77	Download File View File

Crystal structure of human TR alpha bound T3 in monoclinic space group

Nascimento, A.S., Dias, S.M.G., Nunes, F.M., Aparicio, R., Bleicher, L., Ambrosio, A.L.B., Figueira, A.C.M., Santos, M.A.M., Neto, M.O., Fischer, H., Togashi, H.F.M., Craievich, A.F., Garrat, R.C., Baxter, J.D., Webb, P., Polikarpov, I.

(2006) J Mol Biology 360: 586-598

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	THRA protein (protein)
Unique Ligands	T3

Explore in 3D

2H79 \| pdb_00002h79	Download File View File

Crystal Structure of human TR alpha bound T3 in orthorhombic space group

(2006) J Mol Biology 360: 586-598

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	THRA protein (protein)
Unique Ligands	T3

Explore in 3D

2RC5 \| pdb_00002rc5	Download File View File

Refined structure of FNR from Leptospira interrogans

Nascimento, A.S., Catalano-Dupuy, D.L., Polikarpov, I., Ceccarelli, E.A.

(2007) BMC Struct Biol 7: 69-69

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.431 Å
Organisms	Leptospira interrogans
Macromolecule	Ferredoxin-NADP reductase (protein)
Unique Ligands	FAD, SO4, ZN

Explore in 3D

2RC6 \| pdb_00002rc6	Download File View File

Refined structure of FNR from Leptospira interrogans bound to NADP+

Nascimento, A.S., Catalano-Dupuy, D.L., Ceccarelli, E.A., Polikarpov, I.

(2007) BMC Struct Biol 7: 69-69

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Leptospira interrogans
Macromolecule	Ferredoxin-NADP reductase (protein)
Unique Ligands	FAD, NAP, SO4, ZN

Explore in 3D

3C9X \| pdb_00003c9x	Download File View File

Crystal structure of Trichoderma reesei aspartic proteinase

Nascimento, A.S., Krauchenco, S., Golubev, A.M., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2008) J Mol Biology 382: 763-778

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trichoderma reesei
Macromolecule	Trichoderma reesei Aspartic protease (protein)
Unique Ligands	GOL

Explore in 3D

3EMY \| pdb_00003emy	Download File View File

Crystal structure of Trichoderma reesei aspartic proteinase complexed with pepstatin A

Nascimento, A.S., Krauchenco, S., Golubev, A.M., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2008) J Mol Biology 382: 763-778

Released	2008-10-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces argenteolus subsp. toyonakensis Trichoderma reesei
Macromolecule	Pepstatin (protein) Trichoderma reesei Aspartic protease (protein)

Explore in 3D

3EXD \| pdb_00003exd	Download File View File

Sulfur-SAD phased HEWL Crystal

Nascimento, A.S., Liberato, M.V., Polikarpov, I.

(2009) J Synchrotron Radiat 16: 69-75

Released	2008-10-28
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

Explore in 3D

3GWS \| pdb_00003gws	Download File View File

Crystal Structure of T3-Bound Thyroid Hormone Receptor

Nascimento, A.S., Dias, S.M.G., Nunes, F.M., Aparicio, R., Polikarpov, I., Baxter, J.D., Webb, P.

(2006) J Mol Biology 360: 586-598

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Thyroid hormone receptor beta (protein)
Unique Ligands	T3

Explore in 3D

3HDL \| pdb_00003hdl	Download File View File

Crystal Structure of Highly Glycosylated Peroxidase from Royal Palm Tree

Watanabe, L., Moura, P.R., Bleicher, L., Nascimento, A.S., Zamorano, L.S., Calvete, J.J., Bursakov, S., Roig, M.G., Shnyrov, V.L., Polikarpov, I.

(2010) J Struct Biol 169: 226-242

Released	2009-11-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Roystonea regia
Macromolecule	Royal Palm Tree Peroxidase (protein)
Unique Ligands	CA, EDO, HEM, MES, NAG, PEO, SO4
Unique branched monosaccharides	FUC, MAN, NAG, XYZ

Explore in 3D

3I36 \| pdb_00003i36	Download File View File

Crystal Structure of Rat Protein Tyrosine Phosphatase eta Catalytic Domain

Nascimento, A.S., Matozo, H.C., Santos, M.A., Polikarpov, I.

To be published

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.841 Å
Organisms	Rattus norvegicus
Macromolecule	Vascular protein tyrosine phosphatase 1 (protein)
Unique Ligands	CL

Explore in 3D

3ILN \| pdb_00003iln	Download File View File

X-ray structure of the laminarinase from Rhodothermus marinus

Bleicher, L., Golubev, A., Rojas, A.L., Nascimento, A.S., Polikarpov, I.

(2011) J Phys Chem B 115: 7940-7949

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Rhodothermus marinus
Macromolecule	Laminarinase (protein)
Unique Ligands	CA, GOL

Explore in 3D

3JZB \| pdb_00003jzb	Download File View File

Crystal Structure of TR-alfa bound to the selective thyromimetic TRIAC

Nascimento, A.S., Dias, S.M.G., Nunes, F.M., Aparicio, R.

(2009) Proc Natl Acad Sci U S A 106: 20717-20722

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.007 Å
Organisms	Homo sapiens
Macromolecule	THRA protein (protein)
Unique Ligands	4HY

Explore in 3D

3JZC \| pdb_00003jzc	Download File View File

Crystal Structure of TR-beta bound to the selective thyromimetic TRIAC

Nascimento, A.S., Dias, S.G.M., Nunes, F.M., Aparicio, R.

(2009) Proc Natl Acad Sci U S A 106: 20717-20722

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Thyroid hormone receptor beta (protein)
Unique Ligands	4HY

Explore in 3D

4CVU \| pdb_00004cvu	Download File View File

Structure of Fungal beta-mannosidase from Glycoside Hydrolase Family 2 of Trichoderma harzianum

Muniz, J.R.C., Aparicio, R., Santos, J.C., Nascimento, A.S., Golubev, A.M., Polikarpov, I.

(2014) FEBS J 281: 4165-4178

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trichoderma harzianum
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	CA, CD, CL, NA, NAG, PEG, PG4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4EM9 \| pdb_00004em9	Download File View File

Human PPAR gamma in complex with nonanoic acids

Liberato, M.V., Nascimento, A.S., Polikarpov, I.

(2012) PLoS One 7: e36297-e36297

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	GOL, KNA, TCE

Explore in 3D

4EMA \| pdb_00004ema	Download File View File

Human peroxisome proliferator-activated receptor gamma in complex with rosiglitazone

Liberato, M.V., Nascimento, A.S., Polikarpov, I.

(2012) PLoS One 7: e36297-e36297

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.545 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	BRL

Explore in 3D

4UOJ \| pdb_00004uoj	Download File View File

Structure of Fungal beta-mannosidase (GH2) from Trichoderma harzianum

Muniz, J.R.C., Aparicio, R., Santos, J.C., Nascimento, A.S., Golubev, A.M., Polikarpov, I.

(2014) FEBS J 281: 4165

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trichoderma harzianum
Macromolecule	BETA-MANNOSIDASE GH2 (protein)
Unique Ligands	1PE, CA, CD, CL, NA, NAG, PE4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5JBK \| pdb_00005jbk	Download File View File

Trichoderma harzianum GH1 beta-glucosidase ThBgl1

Florindo, R.N., Mutti, H.S., Polikarpov, I., Nascimento, A.S.

(2018) N Biotechnol 40: 218-227

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.593 Å
Organisms	Trichoderma harzianum
Macromolecule	Beta-glucosidase (protein)
Unique Ligands	GOL

Explore in 3D

5JBO \| pdb_00005jbo	Download File View File

Trichoderma harzianum GH1 beta-glucosidase ThBgl2

Florindo, R.N., Mutti, H.S., Polikarpov, I., Nascimento, A.S.

(2018) N Biotechnol 40: 218-227

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Trichoderma harzianum
Macromolecule	Beta-glucosidase (protein)

Explore in 3D

5TOA \| pdb_00005toa	Download File View File

Crystal Structure of ER beta bound to Estradiol

Textor, L., Nascimento, A.S., Polikarpov, I.

(2017) Sci Rep 7: 3509-3509

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor beta (protein)
Unique Ligands	EST

Explore in 3D

5W0A \| pdb_00005w0a	Download File View File

Crystal structure of Trichoderma harzianum endoglucanase I

Godoy, A.S., Pellegrini, V.O.A., Sonoda, M.T., Kadowaki, M.A., Nascimento, A.S., Polikarpov, I.

(2019) Biochim Biophys Acta Gen Subj 1863: 1015-1026

Released	2018-05-30
Method	X-RAY DIFFRACTION 2.898 Å
Organisms	Trichoderma harzianum
Macromolecule	Glucanase (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

5WAB \| pdb_00005wab	Download File View File

Crystal Structure of Bifidobacterium adolescentis GH3 beta-glucosidase

Florindo, R.N., Nascimento, A.S., Polikarpov, I.

(2018) Biochimie 148: 107-115

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Bifidobacterium adolescentis ATCC 15703
Macromolecule	Putative beta-glucosidase (protein)
Unique Ligands	GOL

Explore in 3D

6B7K \| pdb_00006b7k	Download File View File

GH43 Endo-Arabinanase from Bacillus licheniformis

Farro, E.G.S., Nascimento, A.S.

(2018) Int J Biol Macromol 117: 7-16

Released	2018-06-13
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	Endo-alpha-(1->5)-L-arabinanase (protein)
Unique Ligands	CA

Explore in 3D

7LOT \| pdb_00007lot	Download File View File

Human PPAR Gamma LBD in Complex with Tetrazole Compound N-{3-[(4-methylbenzyl)oxy]benzyl}-2H-tetrazol-5-amine.

de Paula, K., Nascimento, A.S.

(2021) J Mol Graph Model 106: 107932-107932

Released	2021-02-24
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	Y9A

Explore in 3D

8U7J \| pdb_00008u7j	Download File View File

Crystal Structure of Staphylococcus aureus PLP synthase complex

Barra, A.L.C., Brognaro, H., Betzel, C., Nascimento, A.S.

(2024) J Biological Chem 300: 107404-107404

Released	2024-07-24
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Staphylococcus aureus subsp. aureus Mu3
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PdxS (protein) Pyridoxal 5'-phosphate synthase subunit PdxT (protein)
Unique Ligands	GLN, PO4, SO4

1 to 25 of 26 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2H77 | pdb_00002h77

2H79 | pdb_00002h79

2RC5 | pdb_00002rc5

2RC6 | pdb_00002rc6

3C9X | pdb_00003c9x

3EMY | pdb_00003emy

3EXD | pdb_00003exd

3GWS | pdb_00003gws

3HDL | pdb_00003hdl

3I36 | pdb_00003i36

3ILN | pdb_00003iln

3JZB | pdb_00003jzb

3JZC | pdb_00003jzc

4CVU | pdb_00004cvu

4EM9 | pdb_00004em9

4EMA | pdb_00004ema

4UOJ | pdb_00004uoj

5JBK | pdb_00005jbk

5JBO | pdb_00005jbo

5TOA | pdb_00005toa

5W0A | pdb_00005w0a

5WAB | pdb_00005wab

6B7K | pdb_00006b7k

7LOT | pdb_00007lot

8U7J | pdb_00008u7j