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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Palm, G.J."

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Search Summary

This query matches 109 Structures.

Refinements

Structure Determination Methodology

experimental (109)

Scientific Name of Source Organism

	Escherichia coli (23)
	Bacteroides thetaiotaomicron (7)
	Eubacterium ramulus (7)
	Escherichia coli K-12 (6)
	Homo sapiens (4)
	Klebsiella pneumoniae subsp. ozaenae (4)
	Piscinibacter sakaiensis (4)
	Suid alphaherpesvirus 1 (4)
	Aeromonas salmonicida subsp. achromogenes (3)
	Escherichia coli BL21(DE3) (3)

More...

Taxonomy

	Bacteria (86)
	Eukaryota (14)
	Duplodnaviria (4)
	Archaea (2)
	unclassified sequences (2)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (109)

Polymer Entity Type

Protein (109)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (39)
	2.0 - 2.5 (44)
	2.5 - 3.0 (16)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (8)
	2005 - 2009 (6)
	2010 - 2014 (34)
	2015 - 2019 (29)
	2020 - 2024 (28)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (41)
	Oxidoreductases (8)
	Isomerases (7)
	Ligases (4)
	Transferases (2)

Symmetry Type

	Asymmetric (38)
	Cyclic (51)
	Dihedral (21)

SCOP Classification

	All alpha proteins (31)
	Alpha and beta proteins (a/b) (13)
	All beta proteins (8)
	Artifacts (16)
	Alpha and beta proteins (a+b) (11)

AllSelected

1 to 25 of 109 Structures

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1DPW \| pdb_00001dpw	Download File View File

STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD

Weiss, M.S., Palm, G.J., Hilgenfeld, R.

(2000) Acta Crystallogr D Biol Crystallogr 56: 952-958

Released	2000-01-03
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CL, MRD, TRS

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1DPX \| pdb_00001dpx	Download File View File

STRUCTURE OF HEN EGG-WHITE LYSOZYME

Weiss, M.S., Palm, G.J., Hilgenfeld, R.

(2000) Acta Crystallogr D Biol Crystallogr 56: 952-958

Released	2000-01-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CL

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1HA3 \| pdb_00001ha3	Download File View File

ELONGATION FACTOR TU IN COMPLEX WITH aurodox

Vogeley, L., Palm, G.J., Mesters, J.R., Hilgenfeld, R.

(2001) J Biological Chem 276: 17149

Released	2001-05-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR TU (protein)
Unique Ligands	BME, GDP, MAU, MG

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1HFJ \| pdb_00001hfj	Download File View File

Asparaginase from Erwinia chrysanthemi, hexagonal form with sulfate

Palm, G.J., Lubkowski, J., Kozak, M., Jaskolski, M., Wlodawer, A.

(2001) Acta Crystallogr D Biol Crystallogr 57: 369

Released	2000-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dickeya chrysanthemi
Macromolecule	L-ASPARAGINE AMIDOHYDROLASE (protein)
Unique Ligands	SO4

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1HFK \| pdb_00001hfk	Download File View File

Asparaginase from Erwinia chrysanthemi, hexagonal form with weak sulfate

Lubkowski, J., Palm, G.J., Kozak, M., Jaskolski, M., Wlodawer, A.

(2001) Acta Crystallogr D Biol Crystallogr 57: 369

Released	2000-12-07
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Dickeya chrysanthemi
Macromolecule	L-ASPARAGINE AMIDOHYDROLASE (protein)
Unique Ligands	SO4

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1LVO \| pdb_00001lvo	Download File View File

Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain

Anand, K., Palm, G.J., Mesters, J.R., Siddell, S.G., Ziebuhr, J., Hilgenfeld, R.

(2002) EMBO J 21: 3213-3224

Released	2002-07-17
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Transmissible gastroenteritis virus
Macromolecule	Replicase, hydrolase domain (protein)
Unique Ligands	DIO, MRD, SO4

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1QMH \| pdb_00001qmh	Download File View File

Crystal structure of RNA 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology

Palm, G.J., Billy, E., Filipowicz, W., Wlodawer, A.

(2000) Structure 8: 13

Released	2000-01-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	RNA 3'-TERMINAL PHOSPHATE CYCLASE (protein)
Unique Ligands	CIT, DTO

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1QMI \| pdb_00001qmi	Download File View File

Crystal structure of RNA 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology

Palm, G.J., Billy, E., Filipowicz, W., Wlodawer, A.

(2000) Structure 8: 13

Released	2000-01-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	RNA 3'-TERMINAL PHOSPHATE CYCLASE (protein)

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1WSA \| pdb_00001wsa	Download File View File

STRUCTURE OF L-ASPARAGINASE II PRECURSOR

Lubkowski, J., Palm, G.J., Gilliland, G.L., Derst, C., Rohm, K.-H., Wlodawer, A.

(1996) Eur J Biochem 241: 201-207

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Wolinella succinogenes
Macromolecule	ASPARAGINE AMIDOHYDROLASE (protein)

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2C0Y \| pdb_00002c0y	Download File View File

THE CRYSTAL STRUCTURE OF A CYS25ALA MUTANT OF HUMAN PROCATHEPSIN S

Kaulmann, G., Palm, G.J., Schilling, K., Hilgenfeld, R., Wiederanders, B.

(2006) Protein Sci 15: 2619

Released	2006-11-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROCATHEPSIN S (protein)

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2FJ1 \| pdb_00002fj1	Download File View File

Crystal Structure Analysis of Tet Repressor (class D) in Complex with 7-Chlortetracycline-Nickel(II)

Orth, P., Saenger, W., Palm, G.J., Hinrichs, W.

(2008) J Biol Inorg Chem 13: 1097-1110

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Tetracycline repressor protein class D (protein)
Unique Ligands	CL, CTC, NI

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2JCG \| pdb_00002jcg	Download File View File

Apo form of the catabolite control protein A (ccpA) from bacillus megaterium, with the DNA binding domain

Singh, R.K., Panjikar, S., Palm, G.J., Hinrichs, W.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 253

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Priestia megaterium
Macromolecule	GLUCOSE-RESISTANCE AMYLASE REGULATOR (protein)
Unique Ligands	CA

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2VKE \| pdb_00002vke	Download File View File

Tet repressor class D complexed with cobalt and tetracycline

Palm, G.J., Hinrichs, W.

(2008) J Biol Inorg Chem 13: 1097

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, CO, TAC

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2W3T \| pdb_00002w3t	Download File View File

Chloro complex of the Ni-Form of E.coli deformylase

Ngo, Y.H.T., Palm, G.J., Hinrichs, W.

(2010) J Biol Inorg Chem 15: 195

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Escherichia coli K-12
Macromolecule	PEPTIDE DEFORMYLASE (protein)
Unique Ligands	CL, EOH, NI

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2W3U \| pdb_00002w3u	Download File View File

formate complex of the Ni-Form of E.coli deformylase

Ngo, Y.H.T., Palm, G.J., Hinrichs, W.

(2010) J Biol Inorg Chem 15: 195

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli K-12
Macromolecule	PEPTIDE DEFORMYLASE (protein)
Unique Ligands	FMT, NI

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2WQ5 \| pdb_00002wq5	Download File View File

Non-antibiotic properties of tetracyclines: structural basis for inhibition of secretory phospholipase A2.

Dalm, D., Palm, G.J., Hinrichs, W.

(2010) J Mol Biology 398: 83

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Naja naja
Macromolecule	PHOSPHOLIPASE A2, ACIDIC (protein)
Unique Ligands	CA, MIY, SO4

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2WUR \| pdb_00002wur	Download File View File

Atomic resolution structure of GFP measured on a rotating anode

Palm, G.J., Schierbeek, A.J., Kloos, M.

(2010) J Am Chem Soc 132: 11093

Released	2010-05-12
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)
Unique Ligands	EOH, IPA

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2X3A \| pdb_00002x3a	Download File View File

AsaP1 inactive mutant E294Q, an extracellular toxic zinc metalloendopeptidase

Bogdanovic, X., Palm, G.J., Singh, R.K., Hinrichs, W.

(2016) FEBS Lett 590: 3280

Released	2011-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aeromonas salmonicida subsp. achromogenes
Macromolecule	TOXIC EXTRACELLULAR ENDOPEPTIDASE (protein)
Unique Ligands	GOL, MES, SO4, ZN

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2X3B \| pdb_00002x3b	Download File View File

AsaP1 inactive mutant E294A, an extracellular toxic zinc metalloendopeptidase

Bogdanovic, X., Palm, G.J., Singh, R.K., Hinrichs, W.

(2016) FEBS Lett 590: 3280

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Aeromonas salmonicida subsp. achromogenes
Macromolecule	TOXIC EXTRACELLULAR ENDOPEPTIDASE (protein)
Unique Ligands	ZN

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2X3C \| pdb_00002x3c	Download File View File

AsaP1 inactive mutant E294Q, an extracellular toxic zinc metalloendopeptidase

Bogdanovic, X., Palm, G.J., Singh, R.K., Hinrichs, W.

(2016) FEBS Lett 590: 3280

Released	2011-02-02
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Aeromonas salmonicida subsp. achromogenes
Macromolecule	TOXIC EXTRACELLULAR ENDOPEPTIDASE (protein)
Unique Ligands	CL, GOL, SO4, ZN

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2XDO \| pdb_00002xdo	Download File View File

Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron

Volkers, G., Palm, G.J., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, SO4

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2XPU \| pdb_00002xpu	Download File View File

TetR(D) in complex with anhydrotetracycline.

Dalm, D., Palm, G.J., Hinrichs, W.

(2014) Biochemistry 53: 7990

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, SO4, TDC

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2XPV \| pdb_00002xpv	Download File View File

TetR(D) in complex with minocycline and magnesium.

Dalm, D., Proft, J., Palm, G.J., Hinrichs, W.

To be published

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, MG, MIY

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2XPW \| pdb_00002xpw	Download File View File

TetR(D) in complex with oxytetracycline and magnesium.

Dalm, D., Proft, J., Palm, G.J., Hinrichs, W.

To be published

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, MES, MG, OTC

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2XRL \| pdb_00002xrl	Download File View File

Tet-repressor class D T103A with doxycycline

Palm, G.J., Waack, P., Hinrichs, W.

(2020) Biochim Biophys Acta Proteins Proteom 1868: 140404-140404

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, DXT, MG

1 to 25 of 109 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DPW | pdb_00001dpw

1DPX | pdb_00001dpx

1HA3 | pdb_00001ha3

1HFJ | pdb_00001hfj

1HFK | pdb_00001hfk

1LVO | pdb_00001lvo

1QMH | pdb_00001qmh

1QMI | pdb_00001qmi

1WSA | pdb_00001wsa

2C0Y | pdb_00002c0y

2FJ1 | pdb_00002fj1

2JCG | pdb_00002jcg

2VKE | pdb_00002vke

2W3T | pdb_00002w3t

2W3U | pdb_00002w3u

2WQ5 | pdb_00002wq5

2WUR | pdb_00002wur

2X3A | pdb_00002x3a

2X3B | pdb_00002x3b

2X3C | pdb_00002x3c

2XDO | pdb_00002xdo

2XPU | pdb_00002xpu

2XPV | pdb_00002xpv

2XPW | pdb_00002xpw

2XRL | pdb_00002xrl