RCSB PDB: Search

3DRF \| pdb_00003drf	Download File View File

Lactococcal OppA complexed with an endogenous peptide in the closed conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) endogenous peptide (protein)

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3DRG \| pdb_00003drg	Download File View File

Lactococcal OppA complexed with bradykinin in the closed conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Bradykinin (protein) Oligopeptide-binding protein oppA (protein)
Unique Ligands	CL

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3DRH \| pdb_00003drh	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with Leu-enkephalin in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) peptide AAAAAA (protein)

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3DRI \| pdb_00003dri	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) peptide AASASA (protein)

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3DRJ \| pdb_00003drj	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) pTH-related peptide (protein)

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3DRK \| pdb_00003drk	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with Neuropeptide S in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Neuropeptide S (protein) Oligopeptide-binding protein oppA (protein)

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3FTO \| pdb_00003fto	Download File View File

Crystal structure of OppA in a open conformation

Berntsson, R.P.-A., Oktaviani, N.A., Fusetti, F., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2009) Protein Sci 18: 1121-1127

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Lactococcus cremoris
Macromolecule	Oligopeptide-binding protein oppA (protein)

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3L6G \| pdb_00003l6g	Download File View File

Crystal structure of lactococcal OpuAC in its open conformation

Berntsson, R.P.A., Wolters, J.C., Gul, N., Karasawa, A., Thunnissen, A.M.W.H., Slotboom, D.J., Poolman, B.

(2010) PLoS One 5: e10361-e10361

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus lactis
Macromolecule	Betaine ABC transporter permease and substrate binding protein (protein)
Unique Ligands	B3P

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3L6H \| pdb_00003l6h	Download File View File

Crystal structure of lactococcal OpuAC in its closed-liganded conformation complexed with glycine betaine

Berntsson, R.P.A., Wolters, J.C., Gul, N., Karasawa, A., Thunnissen, A.M.W.H., Slotboom, D.J., Poolman, B.

(2010) PLoS One 5: e10361-e10361

Released	2010-05-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus lactis
Macromolecule	Betaine ABC transporter permease and substrate binding protein (protein)
Unique Ligands	BET, CL

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3RLB \| pdb_00003rlb	Download File View File

Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter

Erkens, G.B., Berntsson, R.P.-A., Fulyani, F., Majsnerowska, M., Vujicic-Zagar, A., ter Beek, J., Poolman, B., Slotboom, D.J.

(2011) Nat Struct Mol Biol 18: 755-760

Released	2011-06-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	ThiT (protein)
Unique Ligands	BNG, VIB

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3RYA \| pdb_00003rya	Download File View File

Lactococcal OppA complexed with SLSQLSSQS

Berntsson, R.P.-A., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2011) J Bacteriol 193: 4254-4256

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide (protein) Oligopeptide-binding protein oppA (protein)

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3RYB \| pdb_00003ryb	Download File View File

Lactococcal OppA complexed with SLSQSLSQS

Berntsson, R.P.-A., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2011) J Bacteriol 193: 4254-4256

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide (protein) Oligopeptide-binding protein oppA (protein)

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4DVE \| pdb_00004dve	Download File View File

Crystal structure at 2.1 A of the S-component for biotin from an ECF-type ABC transporter

Berntsson, R.P.-A., ter Beek, J., Majsnerowska, M., Duurkens, R., Puri, P., Poolman, B., Slotboom, D.J.

(2012) Proc Natl Acad Sci U S A 109: 13990-13995

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Biotin transporter BioY (protein)
Unique Ligands	BNG, BTN

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4FAJ \| pdb_00004faj	Download File View File

Structure and mode of peptide binding of pheromone receptor PrgZ

Berntsson, R.P.-A., Schuurman-Wolters, G.K., Dunny, K., Slotboom, D.J., Poolman, B.

(2012) J Biological Chem 287: 37165-37170

Released	2012-09-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	PrgZ (protein) Sex pheromone cCF10 (protein)
Unique Ligands	GOL, ZN

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4G4P \| pdb_00004g4p	Download File View File

Crystal structure of glutamine-binding protein from Enterococcus faecalis at 1.5 A

Fulyani, F., Guskov, A., Zagar, A.V., Slotboom, D.-J., Poolman, B.

(2013) Structure 21: 1879-1888

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Enterococcus faecalis V583
Macromolecule	Amino acid ABC transporter, amino acid-binding/permease protein (protein)
Unique Ligands	GLN, MES

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4KPT \| pdb_00004kpt	Download File View File

Crystal structure of substrate binding domain 1 (SBD1) OF ABC transporter GLNPQ from lactococcus lactis

Vujicic Zagar, A., Guskov, A., Schuurman-Wolters, G.K., Slotboom, D.J., Poolman, B.

(2013) Structure 21: 1879-1888

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Lactococcus lactis subsp. lactis Il1403
Macromolecule	Glutamine ABC transporter permease and substrate binding protein protein (protein)
Unique Ligands	ETE, MES, P6G, PEG, PG4

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4KQP \| pdb_00004kqp	Download File View File

Crystal structure of Lactococcus lactis GlnP substrate binding domain 2 (SBD2) in complex with glutamine at 0.95 A resolution

Vujicic Zagar, A., Guskov, A., Schuurman-Wolters, G.K., Slotboom, D.J., Poolman, B.

(2013) Structure 21: 1879-1888

Released	2013-09-11
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Lactococcus lactis subsp. lactis Il1403
Macromolecule	Glutamine ABC transporter permease and substrate binding protein protein (protein)
Unique Ligands	GLN

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4KR5 \| pdb_00004kr5	Download File View File

Crystal structure of Lactococcus lactis GlnP substrate binding domain 2 (SBD2) in open conformation

Vujicic Zagar, A., Guskov, A., Schuurman-Wolters, G.K., Slotboom, D.J., Poolman, B.

(2013) Structure 21: 1879-1888

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus lactis subsp. lactis Il1403
Macromolecule	Glutamine ABC transporter permease and substrate binding protein protein (protein)
Unique Ligands	CL, MG, P33, P6G, PE4, PEG, PG0

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4LA9 \| pdb_00004la9	Download File View File

Crystal structure of an empty substrate binding domain 1 (SBD1) OF ABC TRANSPORTER GLNPQ from lactococcus lactis

Guskov, A., Schuurman-Wolters, G.K., Slotboom, D.J., Poolman, B.

(2013) Structure 21: 1879-1888

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lactococcus lactis subsp. lactis Il1403
Macromolecule	Glutamine ABC transporter permease and substrate binding protein protein (protein)
Unique Ligands	PEG, PO4

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4Z7E \| pdb_00004z7e	Download File View File

Soluble binding domain of Lmo1422 ABC-transporter

Ruiz, S.J., Guskov, A., Poolman, B.

(2016) Crystals (Basel) 6: 162

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Listeria monocytogenes EGD-e
Macromolecule	Lmo1422 protein (protein)
Unique Ligands	1PE, PEG, PPI

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4ZEF \| pdb_00004zef	Download File View File

Crystal structure of substrate binding domain 2 (SBD2) OF ABC transporter GLNPQ from Enterococcus faecalis

Fulyani, F., Guskov, A., Poolman, B.

To be published

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Enterococcus faecalis V583
Macromolecule	Amino acid ABC transporter amino acid-binding/permease (protein)
Unique Ligands	GLN

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5MYJ \| pdb_00005myj	Download File View File

Structure of 70S ribosome from Lactococcus lactis

Franken, L.E., Oostergetel, G.T., Pijning, T., Puri, P., Boekema, E.J., Poolman, B., Guskov, A.

(2017) Nat Commun 8: 722-722

Released	2017-10-11
Method	ELECTRON MICROSCOPY 5.6 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 3

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6FXG \| pdb_00006fxg	Download File View File

Crystal structure of substrate binding domain 1 (SBD1) OF ABC transporter GLNPQ in complex with Asparagine

Guskov, A., Schuurman-Wolters, G.K., Poolman, B.

To be published

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lactococcus lactis subsp. lactis
Macromolecule	Amino acid ABC transporter membrane protein PAAT family (protein)
Unique Ligands	ASN

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6H30 \| pdb_00006h30	Download File View File

The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter

Schuurman-Wolters, G.K., Guskov, A., Poolman, B.

To be published

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Lactococcus lactis subsp. lactis Il1403
Macromolecule	Glutamine ABC transporter permease and substrate binding protein protein (protein)
Unique Ligands	1PE, MES, PE5, PEG, PG4, PGE

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7AHC \| pdb_00007ahc	Download File View File

OpuA apo inward-facing

Sikkema, H.R., Rheinberger, J., Paulino, C., Poolman, B.

(2020) Sci Adv 6:

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Lactococcus lactis subsp. lactis
Macromolecule	ABC transporter permease subunit (protein) ABC-type proline/glycine betaine transport system ATPase component (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3DRF | pdb_00003drf

3DRG | pdb_00003drg

3DRH | pdb_00003drh

3DRI | pdb_00003dri

3DRJ | pdb_00003drj

3DRK | pdb_00003drk

3FTO | pdb_00003fto

3L6G | pdb_00003l6g

3L6H | pdb_00003l6h

3RLB | pdb_00003rlb

3RYA | pdb_00003rya

3RYB | pdb_00003ryb

4DVE | pdb_00004dve

4FAJ | pdb_00004faj

4G4P | pdb_00004g4p

4KPT | pdb_00004kpt

4KQP | pdb_00004kqp

4KR5 | pdb_00004kr5

4LA9 | pdb_00004la9

4Z7E | pdb_00004z7e

4ZEF | pdb_00004zef

5MYJ | pdb_00005myj

6FXG | pdb_00006fxg

6H30 | pdb_00006h30

7AHC | pdb_00007ahc