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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Prota, A.E."

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Search Summary

This query matches 151 Structures.

Refinements

Structure Determination Methodology

experimental (151)

Scientific Name of Source Organism

	Bos taurus (136)
	Gallus gallus (136)
	Rattus norvegicus (136)
	Homo sapiens (8)
	Mus musculus (2)
	Pyrobaculum aerophilum (2)
	Mammalian orthoreovirus 3 Dearing (1)
	Naumovozyma castellii (1)
	Orf virus (strain NZ2) (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (147)
	Archaea (2)
	Riboviria (1)
	Varidnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (151)

Polymer Entity Type

Protein (151)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (13)
	2.0 - 2.5 (102)
	2.5 - 3.0 (30)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (1)
	2010 - 2014 (20)
	2015 - 2019 (33)
	2020 - 2024 (92)

Enzyme Classification Name

	Hydrolases (140)
	Ligases (7)
	Transferases (4)
	Isomerases (2)
	Lyases (2)

Symmetry Type

	Asymmetric (143)
	Cyclic (9)

SCOP Classification

	Alpha and beta proteins (a/b) (108)
	Alpha and beta proteins (a+b) (108)
	All alpha proteins (110)
	Artifacts (99)
	All beta proteins (2)
	Small proteins (4)

AllSelected

1 to 25 of 151 Structures

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1KKE \| pdb_00001kke	Download File View File

Crystal Structure of Reovirus Attachment Protein Sigma1 Trimer

Chappell, J.D., Prota, A.E., Dermody, T.S., Stehle, T.

(2002) EMBO J 21: 1-11

Released	2001-12-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mammalian orthoreovirus 3 Dearing
Macromolecule	SIGMA 1 PROTEIN (protein)

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1LY2 \| pdb_00001ly2	Download File View File

Crystal structure of unliganded human CD21 SCR1-SCR2 (Complement receptor type 2)

Prota, A.E., Sage, D.R., Stehle, T., Fingeroth, J.D.

(2002) Proc Natl Acad Sci U S A 99: 10641-10646

Released	2002-07-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	complement receptor type 2 (protein)
Unique Ligands	NAG

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1NBQ \| pdb_00001nbq	Download File View File

Crystal Structure of Human Junctional Adhesion Molecule Type 1

Prota, A.E., Campbell, J.A., Schelling, P., Forrest, J.C., Watson, M.J., Peters, T.R., Aurrand-Lions, M., Imhof, B.A., Dermody, T.S., Stehle, T.

(2003) Proc Natl Acad Sci U S A 100: 5366-5371

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Junctional adhesion molecule 1 (protein)

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1XQO \| pdb_00001xqo	Download File View File

Crystal structure of native Pa-AGOG, 8-oxoguanine DNA glycosylase from Pyrobaculum aerophilum

Lingaraju, G.M., Sartori, A.A., Kostrewa, D., Prota, A.E., Jiricny, J., Winkler, F.K.

(2005) Structure 13: 87-98

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	8-oxoguanine DNA glycosylase (protein)

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1XQP \| pdb_00001xqp	Download File View File

Crystal structure of 8-oxoguanosine complexed Pa-AGOG, 8-oxoguanine DNA glycosylase from Pyrobaculum aerophilum

Lingaraju, G.M., Sartori, A.A., Kostrewa, D., Prota, A.E., Jiricny, J., Winkler, F.K.

(2005) Structure 13: 87-98

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	8-oxoguanine DNA glycosylase (protein)
Unique Ligands	8HG

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2GNN \| pdb_00002gnn	Download File View File

Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E

Prota, A.E., Pieren, M., Wagner, A., Kostrewa, D., Winkler, F.K., Ballmer-Hofer, K.

(2006) J Biological Chem 281: 19578-19587

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Orf virus (strain NZ2)
Macromolecule	Vascular endothelial growth factor homolog (protein)
Unique Ligands	BEN, CL, GOL, NAG, SO4, TRS

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2X1W \| pdb_00002x1w	Download File View File

Crystal Structure of VEGF-C in Complex with Domains 2 and 3 of VEGFR2

Leppanen, V.M., Prota, A.E., Jeltsch, M., Anisimov, A., Kalkkinen, N., Strandin, T., Lankinen, H., Goldman, A., Ballmer-Hofer, K., Alitalo, K.

(2010) Proc Natl Acad Sci U S A 107: 2425

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR C (protein) VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (protein)
Unique Ligands	CS, NAG
Unique branched monosaccharides	BMA, NAG

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2X1X \| pdb_00002x1x	Download File View File

CRYSTAL STRUCTURE OF VEGF-C IN COMPLEX WITH DOMAINS 2 AND 3 OF VEGFR2 IN A TETRAGONAL CRYSTAL FORM

Leppanen, V.-M., Prota, A.E., Jeltsch, M., Anisimov, A., Kalkkinen, N., Strandin, T., Lankinen, H., Goldman, A., Ballmer-Hofer, K., Alitalo, K.

(2010) Proc Natl Acad Sci U S A 107: 2425

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR C (protein) VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (protein)
Unique Ligands	HG, NAG
Unique branched monosaccharides	BMA, NAG

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4BSJ \| pdb_00004bsj	Download File View File

Crystal structure of VEGFR-3 extracellular domains D4-5

Leppanen, V.-M., Tvorogov, D., Kisko, K., Prota, A.E., Jeltsch, M., Anisimov, A., Markovic-Mueller, S., Stuttfeld, E., Goldie, K.N., Ballmer-Hofer, K., Alitalo, K.

(2013) Proc Natl Acad Sci U S A 110: 12960

Released	2013-07-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3 (protein)
Unique Ligands	NAG

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4BSK \| pdb_00004bsk	Download File View File

Crystal structure of VEGF-C in complex with VEGFR-3 domains D1-2

Leppanen, V.M., Tvorogov, D., Kisko, K., Prota, A.E., Jeltsch, M., Anisimov, A., Markovic-Mueller, S., Stuttfeld, E., Goldie, K.N., Ballmer-Hofer, K., Alitalo, K.

(2013) Proc Natl Acad Sci U S A 110: 12960

Released	2013-07-31
Method	X-RAY DIFFRACTION 4.201 Å
Organisms	Homo sapiens
Macromolecule	VASCULAR ENDOTHELIAL GROWTH FACTOR C (protein) VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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4I4T \| pdb_00004i4t	Download File View File

Crystal structure of tubulin-RB3-TTL-Zampanolide complex

Prota, A.E., Steinmetz, M.O.

(2013) Science 339: 587-590

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin Tyrosine ligase, TTL (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ACP, CA, CL, GDP, GOL, GTP, MES, MG, TYR, ZPN

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4I50 \| pdb_00004i50	Download File View File

Crystal structure of tubulin-stathmin-TTL-Epothilone A complex

Prota, A.E., Bargsten, K., Zurwerra, D., Field, J.J., Diaz, J.F., Altmann, K.H., Steinmetz, M.O.

(2013) Science 339: 587-590

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin Tyrosine Ligase, TTL (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ACP, CA, CL, EP, GDP, GOL, GTP, MES, MG

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4I55 \| pdb_00004i55	Download File View File

Crystal structure of tubulin-stathmin-TTL complex

Prota, A.E., Bargsten, K., Zurwerra, D., Field, J.J., Diaz, J.F., Altmann, K.H., Steinmetz, M.O.

(2013) Science 339: 587-590

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase, TTL (protein)
Unique Ligands	ACP, CA, CL, GDP, GTP, MES, MG

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4IHJ \| pdb_00004ihj	Download File View File

Crystal structure of tubulin-stathmin-TTL-ADP complex

Prota, A.E., Magiera, M.M., Kuijpers, M., Bargsten, K., Frey, D., Wieser, M., Jaussi, R., Hoogenraad, C.C., Kammerer, R.A., Janke, C., Steinmetz, M.O.

(2013) J Cell Biol 200: 259-270

Released	2013-02-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) TUBULIN TYROSINE LIGASE, TTL (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ADP, CA, CL, GDP, GOL, GTP, MES, MG

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4IIJ \| pdb_00004iij	Download File View File

Crystal structure of tubulin-stathmin-TTL-apo complex

Prota, A.E., Magiera, M.M., Kuijpers, M., Bargsten, K., Frey, D., Wieser, M., Jaussi, R., Hoogenraad, C.C., Kammerer, R.A., Janke, C., Steinmetz, M.O.

(2013) J Cell Biol 200: 259-270

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase, TTL (protein)
Unique Ligands	CA, CL, GDP, GTP, MES, MG

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4KKI \| pdb_00004kki	Download File View File

Crystal Structure of Haptocorrin in Complex with CNCbl

Furger, E., Frei, D.C., Schibli, R., Fischer, E., Prota, A.E.

(2013) J Biological Chem 288: 25466-25476

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Transcobalamin-1 (protein)
Unique Ligands	CA, CNC, NAG, PEG

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4KKJ \| pdb_00004kkj	Download File View File

Crystal Structure of Haptocorrin in Complex with Cbi

Furger, E., Frei, D.C., Schibli, R., Fischer, E., Prota, A.E.

(2013) J Biological Chem 288: 25466-25476

Released	2013-07-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Transcobalamin-1 (protein)
Unique Ligands	CBY, CYN, NAG

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4O2A \| pdb_00004o2a	Download File View File

Tubulin-BAL27862 complex

Prota, A.E., Franck, D., Bachmann, F., Bargsten, K., Buey, R.M., Pohlmann, J., Reinelt, S., Lane, H., Steinmetz, M.O.

(2014) J Mol Biology 426: 1848-1860

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) TUBULIN-TYROSINE LIGASE (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	2RR, ADP, CA, CL, GDP, GOL, GTP, IMD, MES, MG

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4O2B \| pdb_00004o2b	Download File View File

Tubulin-Colchicine complex

Prota, A.E., Franck, D., Bachmann, F., Bargsten, K., Buey, R.M., Pohlmann, J., Reinelt, S., Lane, H., Steinmetz, M.O.

(2014) J Mol Biology 426: 1848-1860

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-tyrosine ligase (protein)
Unique Ligands	ACP, CA, GDP, GOL, GTP, IMD, LOC, MES, MG, PEG

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4O4H \| pdb_00004o4h	Download File View File

Tubulin-Laulimalide complex

Prota, A.E., Bargsten, K., Northcote, P.T., Marsh, M., Altmann, K.H., Miller, J.H., Diaz, J.F., Steinmetz, M.O.

(2014) Angew Chem Int Ed Engl 53: 1621-1625

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-tyrosine ligase (protein)
Unique Ligands	ACP, CA, GDP, GOL, GTP, LLM, MG

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4O4I \| pdb_00004o4i	Download File View File

Tubulin-Laulimalide-Epothilone A complex

Prota, A.E., Bargsten, K., Northcote, P.T., Marsh, M., Altmann, K.H., Miller, J.H., Diaz, J.F., Steinmetz, M.O.

(2014) Angew Chem Int Ed Engl 53: 1621-1625

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-tyrosine ligase (protein)
Unique Ligands	ACP, CA, EP, GDP, GTP, LLM, MES, MG

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4O4J \| pdb_00004o4j	Download File View File

Tubulin-Peloruside A complex

Prota, A.E., Bargsten, K., Northcote, P.T., Marsh, M., Altmann, K.H., Miller, J.H., Diaz, J.F., Steinmetz, M.O.

(2014) Angew Chem Int Ed Engl 53: 1621-1625

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-tyrosine ligase (protein)
Unique Ligands	ACP, CA, GDP, GOL, GTP, MG, POU

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4O4L \| pdb_00004o4l	Download File View File

Tubulin-Peloruside A-Epothilone A complex

Prota, A.E., Bargsten, K., Northcote, P.T., Marsh, M., Altmann, K.H., Miller, J.H., Diaz, J.F., Steinmetz, M.O.

(2014) Angew Chem Int Ed Engl 53: 1621-1625

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-tyrosine ligase (protein)
Unique Ligands	CA, EP, GDP, GTP, MES, MG, POU

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4TUY \| pdb_00004tuy	Download File View File

Tubulin-Rhizoxin complex

Prota, A.E., Bargsten, K., Diaz, J.F., Marsh, M., Cuevas, C., Liniger, M., Neuhaus, C., Andreu, J.M., Altmann, K.H., Steinmetz, M.O.

(2014) Proc Natl Acad Sci U S A 111: 13817-13821

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	36L, ACP, CA, GDP, GTP, MES, MG

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4TV8 \| pdb_00004tv8	Download File View File

Tubulin-Maytansine complex

Prota, A.E., Bargsten, K., Diaz, J.F., Marsh, M., Cuevas, C., Liniger, M., Neuhaus, C., Andreu, J.M., Altmann, K.H., Steinmetz, M.O.

(2014) Proc Natl Acad Sci U S A 111: 13817-13821

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.103 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	3GT, ACP, CA, GDP, GOL, GTP, MES, MG

1 to 25 of 151 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KKE | pdb_00001kke

1LY2 | pdb_00001ly2

1NBQ | pdb_00001nbq

1XQO | pdb_00001xqo

1XQP | pdb_00001xqp

2GNN | pdb_00002gnn

2X1W | pdb_00002x1w

2X1X | pdb_00002x1x

4BSJ | pdb_00004bsj

4BSK | pdb_00004bsk

4I4T | pdb_00004i4t

4I50 | pdb_00004i50

4I55 | pdb_00004i55

4IHJ | pdb_00004ihj

4IIJ | pdb_00004iij

4KKI | pdb_00004kki

4KKJ | pdb_00004kkj

4O2A | pdb_00004o2a

4O2B | pdb_00004o2b

4O4H | pdb_00004o4h

4O4I | pdb_00004o4i

4O4J | pdb_00004o4j

4O4L | pdb_00004o4l

4TUY | pdb_00004tuy

4TV8 | pdb_00004tv8