RCSB PDB: Search

5NE0 \| pdb_00005ne0	Download File View File

Room temperature in-situ structure of hen egg-white lysozyme from crystals enclosed between ultrathin silicon nitride membranes

Martiel, I., Opara, N., Arnold, S.A., Braun, T., Stahlberg, H., Makita, M., David, C., Padeste, C.

(2017) J Appl Crystallogr 50: 909-918

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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6F7A \| pdb_00006f7a	Download File View File

Gloeobacter Ligand-gated Ion Channel (GLIC) closed state crystallized in an ultra-swollen lipidic mesophase

Martiel, I., Zabara, A., Chong, J.Y.T., Stark, L., Cromer, B., Dummond, C.J., Mezzenga, R.

(2018) Nat Commun 9: 544-544

Released	2018-02-14
Method	X-RAY DIFFRACTION 6 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	Proton-gated ion channel (protein)

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6FVL \| pdb_00006fvl	Download File View File

DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide

Martiel, I., Andre, C., Olieric, V., Guichard, G., Burnouf, D.

(2019) ACS Infect Dis

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.975 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Beta sliding clamp (protein) P7 peptide (protein)
Unique Ligands	1PE, GOL

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6FVM \| pdb_00006fvm	Download File View File

Mutant DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide

Martiel, I., Andre, C., Olieric, V., Guichard, G., Burnouf, D.

(2019) ACS Infect Dis

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.631 Å
Organisms	Escherichia coli O157:H7 synthetic construct
Macromolecule	Beta sliding clamp (protein) P7 peptide (protein)
Unique Ligands	1PE, CA, GOL

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6FVN \| pdb_00006fvn	Download File View File

DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide

Martiel, I., Andre, C., Olieric, V., Guichard, G., Burnouf, D.

(2019) ACS Infect Dis

Released	2019-04-10
Method	X-RAY DIFFRACTION 3.142 Å
Organisms	Mycobacterium tuberculosis CDC1551 synthetic construct
Macromolecule	Beta sliding clamp (protein) P7 peptide (protein)

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6FVO \| pdb_00006fvo	Download File View File

Mutant DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide

Martiel, I., Andre, C., Olieric, V., Guichard, G., Burnouf, D.

(2019) ACS Infect Dis

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.689 Å
Organisms	Mycobacterium tuberculosis CDC1551 synthetic construct
Macromolecule	Beta sliding clamp (protein) P7 peptide (protein)
Unique Ligands	CA

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6S0L \| pdb_00006s0l	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	A2a adenosine receptor (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S0Q \| pdb_00006s0q	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from 50,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S19 \| pdb_00006s19	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.Ch.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1D \| pdb_00006s1d	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from 20,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1E \| pdb_00006s1e	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1G \| pdb_00006s1g	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from 50,000 diffraction patterns.

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6TK1 \| pdb_00006tk1	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 20ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK2 \| pdb_00006tk2	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK3 \| pdb_00006tk3	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 30us+150us structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK4 \| pdb_00006tk4	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ns+16ns structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK5 \| pdb_00006tk5	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 800fs+2ps structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK6 \| pdb_00006tk6	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in neutral conditions with attached light datasets at 800fs, 2ps, 100ps, 1ns, 16ns, 1us, 30us, 150us, 1ms and 20ms

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK7 \| pdb_00006tk7	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in acidic conditions

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6YOB \| pdb_00006yob	Download File View File

Structure of Lysozyme from COC IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	ACY, BR, NA, PG0

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6YOC \| pdb_00006yoc	Download File View File

Structure of Lysozyme from COC IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	ACY, BR, NA, PE5

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6YOD \| pdb_00006yod	Download File View File

Structure of Lysozyme from SiN IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	ACY, AE3, BR, NA, PG0

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6YOE \| pdb_00006yoe	Download File View File

Structure of Lysozyme from SiN IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	ACY, AE3, BR, NA

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6YOF \| pdb_00006yof	Download File View File

Structure of PepTSt from COC IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PG0, PGE, PO4

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6YOG \| pdb_00006yog	Download File View File

Structure of PepTSt from COC IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging

Huang, C.-Y., Martiel, I., Villanueva-Perez, P., Panepucci, E., Caffrey, M., Wang, M.

(2020) IUCrJ 7: 1131-1141

Released	2020-11-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PG0, PGE, PO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5NE0 | pdb_00005ne0

6F7A | pdb_00006f7a

6FVL | pdb_00006fvl

6FVM | pdb_00006fvm

6FVN | pdb_00006fvn

6FVO | pdb_00006fvo

6S0L | pdb_00006s0l

6S0Q | pdb_00006s0q

6S19 | pdb_00006s19

6S1D | pdb_00006s1d

6S1E | pdb_00006s1e

6S1G | pdb_00006s1g

6TK1 | pdb_00006tk1

6TK2 | pdb_00006tk2

6TK3 | pdb_00006tk3

6TK4 | pdb_00006tk4

6TK5 | pdb_00006tk5

6TK6 | pdb_00006tk6

6TK7 | pdb_00006tk7

6YOB | pdb_00006yob

6YOC | pdb_00006yoc

6YOD | pdb_00006yod

6YOE | pdb_00006yoe

6YOF | pdb_00006yof

6YOG | pdb_00006yog