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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Song, M.K."

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Search Summary

This query matches 253 Structures.

Refinements

Structure Determination Methodology

experimental (253)

Scientific Name of Source Organism

	Homo sapiens (49)
	Pseudomonas aeruginosa PAO1 (14)
	Mus musculus (13)
	Trypanosoma brucei (11)
	Physeter macrocephalus (10)
	Aedes aegypti (8)
	Escherichia coli K-12 (7)
	Gallus gallus (7)
	Pseudomonas aeruginosa (7)
	Staphylococcus aureus (6)

More...

Taxonomy

	Eukaryota (127)
	Bacteria (94)
	Archaea (11)
	Riboviria (5)
	other sequences (4)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (246)
	SOLUTION NMR (7)

Polymer Entity Type

	Protein (229)
	DNA (33)
	NA-hybrid (4)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (21)
	1.5 - 2.0 (100)
	2.0 - 2.5 (87)
	2.5 - 3.0 (26)
	3.0 - 3.5 (8)
	3.5 - 4.0 (2)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (20)
	2000 - 2004 (37)
	2005 - 2009 (82)
	2010 - 2014 (74)
	2015 - 2019 (36)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (64)
	Transferases (39)
	Oxidoreductases (25)
	Lyases (11)
	Isomerases (5)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (134)
	Cyclic (96)
	Dihedral (17)

SCOP Classification

	All alpha proteins (59)
	Alpha and beta proteins (a+b) (29)
	Alpha and beta proteins (a/b) (40)
	All beta proteins (34)
	Artifacts (18)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 253 Structures

Page 1 of 11

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1AL9 \| pdb_00001al9	Download File View File

NMR STUDY OF DNA (5'-D(APCPGPTPAPCPGPT)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE

Robinson, H., Wang, A.H.-J.

(1997) Biochemistry 36: 8663-8670

Released	1997-09-17
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APCPGPTPAPCPGPT)-3') (nucleic acid)
Unique Ligands	BDA

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1AMD \| pdb_00001amd	Download File View File

NMR STUDY OF DNA (5'-D(TPGPTPAPCPA)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE

Robinson, H., Wang, A.H.-J.

(1997) Biochemistry 36: 8663-8670

Released	1997-09-17
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPGPTPAPCPA)-3') (nucleic acid)
Unique Ligands	BNR

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1AZP \| pdb_00001azp	Download File View File

HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX

Robinson, H., Gao, Y.-G., Mccrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.-J.

(1998) Nature 392: 202-205

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) (protein) DNA (5'-D(GPCPGPAPTPCPGPC)-3') (nucleic acid)

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1AZQ \| pdb_00001azq	Download File View File

HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX

Robinson, H., Gao, Y.-G., Mccrary, B.S., Edmondson, S.P., Shriver, J.W., Wang, A.H.-J.

(1998) Nature 392: 202-205

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) (protein) DNA (5'-D(GPTPAPAPTPTPAPC)-3') (nucleic acid)

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1BF4 \| pdb_00001bf4	Download File View File

CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX

Su, S., Gao, Y.-G., Robinson, H., Padmanabhan, S., Lim, L., Shriver, J.W., Wang, A.H.-J.

(1998) Nat Struct Biol 5: 782-786

Released	1999-11-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	PROTEIN (CHROMOSOMAL PROTEIN SSO7D) (protein) DNA (5'-D(GPCPGPAPAPCPGPC)-3') (nucleic acid) DNA (5'-D(GPCPGPTP5IUPCPGPC)-3') (nucleic acid)

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1BHR \| pdb_00001bhr	Download File View File

2'-DEOXY-ISOGUANOSINE BASE PAIRED TO THYMIDINE, NMR, MINIMIZED AVERAGE STRUCTURE

Robinson, H., Gao, Y.-G., Bauer, C., Roberts, C., Switzer, C., Wang, A.H.-J.

(1998) Biochemistry 37: 10897-10905

Released	1998-11-04
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPCPIGUPAPAPTPTPTPGPCPG)-3') (nucleic acid)

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1BNZ \| pdb_00001bnz	Download File View File

SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX

Gao, Y.-G., Su, S.-Y., Robinson, H., Padmanabhan, S., Lim, L., Mccrary, B.S., Edmondos, S.P., Shrive, J.W., Wang, A.H.-J.

(1998) Nat Struct Biol 5: 782-786

Released	1998-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	DNA-BINDING PROTEIN 7A (protein) 5'-D(GPTPAPAPTPTPAPC)-3' (nucleic acid)

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1C8C \| pdb_00001c8c	Download File View File

CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS

Su, S., Gao, Y.-G., Robinson, H., Liaw, Y.-C., Edmondson, S.P., Shriver, J.W., Wang, A.H.-J.

(2000) J Mol Biology 303: 395-403

Released	2001-05-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA-BINDING PROTEIN 7A (protein) 5'-D(GPTPGPAPTPCPGPC)-3' (nucleic acid)

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1CA5 \| pdb_00001ca5	Download File View File

INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA

Su, S., Gao, Y.-G., Robinson, H., Shriver, J.W., Wang, A.H.-J.

(2000) J Mol Biology 303: 395-403

Released	2000-02-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	CHROMOSOMAL PROTEIN SAC7D (protein) 5'-D(GPTPGPAPTPCPAPC)-3' (nucleic acid)

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1CA6 \| pdb_00001ca6	Download File View File

INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA

Su, S., Gao, Y.-G., Robinson, H., Shriver, J.W., Wang, A.H.-J.

(2000) J Mol Biology 303: 395-403

Released	2000-02-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfolobus acidocaldarius synthetic construct
Macromolecule	CHROMOSOMAL PROTEIN SAC7D (protein) 5'-D(GPTPGPAPTPCPGPC)-3' (nucleic acid)

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1CC3 \| pdb_00001cc3	Download File View File

PURPLE CUA CENTER

Robinson, H., Ang, M.C., Gao, Y.-G., Hay, M.T., Lu, Y., Wang, A.H.-J.

(1999) Biochemistry 38: 5677-5683

Released	1999-12-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PROTEIN (CUA AZURIN) (protein)
Unique Ligands	CU

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1D21 \| pdb_00001d21	Download File View File

BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON

Gao, Y.-G., Liaw, Y.-C., Robinson, H., Wang, A.H.-J.

(1990) Biochemistry 29: 10307-10316

Released	1991-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D((5CM)PGPTP(AS)P(5CM)PG)-3') (nucleic acid)
Unique Ligands	NGM

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1D22 \| pdb_00001d22	Download File View File

BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON

Gao, Y.-G., Liaw, Y.-C., Robinson, H., Wang, A.H.-J.

(1990) Biochemistry 29: 10307-10316

Released	1991-07-15
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D((5CM)PGPTP(AS)P(5CM)PG)-3') (nucleic acid)
Unique Ligands	NGU

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1D8X \| pdb_00001d8x	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.2 Å
Macromolecule	5'-D(CPCPGPAPAPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	MG, NCO

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1D9R \| pdb_00001d9r	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	5'-D(CPCPGPAPAP(BRU)PGPAPGPG)-3' (nucleic acid)
Unique Ligands	NCO

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1DCR \| pdb_00001dcr	Download File View File

CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS

Gao, Y.-G., Robinson, H., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(1999) Biochemistry 38: 16452-16460

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(CPCPGPAPAP(BRU)PGPAPGPG)-3' (nucleic acid)
Unique Ligands	MG, NA, SPM

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1DNO \| pdb_00001dno	Download File View File

A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	DNA/RNA (5'-R(GPCPGP)-D(TPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNT \| pdb_00001dnt	Download File View File

RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA/RNA (5'-R(GPCP)-D(GPTPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNX \| pdb_00001dnx	Download File View File

RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA/RNA (5'-R(GP)-D(CPGPTPAPTPAPCPGPC)-3') (hybrid)
Unique Ligands	MG

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1DNZ \| pdb_00001dnz	Download File View File

A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES

Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2000) Nucleic Acids Res 28: 1760-1766

Released	2000-04-10
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(APCPCPGPGPCPCPGPGPT)-3') (nucleic acid)
Unique Ligands	MG

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1DSC \| pdb_00001dsc	Download File View File

NMR STUDY OF DNA (5'-D(GPAPAPGPCPTPTPC)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1DSD \| pdb_00001dsd	Download File View File

NMR STUDY OF DNA (5'-D(GPAPTPGPCPTPTPC)-3') T:T MISMATCHED DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPTPGPCPTPTPC)-3') (nucleic acid)

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1FD5 \| pdb_00001fd5	Download File View File

BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX)

Yang, X.-L., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2000) Biochemistry 39: 10950-10957

Released	2000-08-07
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid)
Unique Ligands	B9A, CO, MG

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1FDG \| pdb_00001fdg	Download File View File

BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX)

Yang, X.-L., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2000) Biochemistry 39: 10950-10957

Released	2000-08-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid)
Unique Ligands	9TA, CO, MG

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1I3W \| pdb_00001i3w	Download File View File

ACTINOMYCIN D BINDING TO CGATCGATCG

Robinson, H., Gao, Y.-G., Yang, X.-L., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2001) Biochemistry 40: 5587

Released	2001-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(CGPAPTPCPGPAP(BRU)PCPGP)-3' (nucleic acid)

1 to 25 of 253 Structures

Page 1 of 11

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AL9 | pdb_00001al9

1AMD | pdb_00001amd

1AZP | pdb_00001azp

1AZQ | pdb_00001azq

1BF4 | pdb_00001bf4

1BHR | pdb_00001bhr

1BNZ | pdb_00001bnz

1C8C | pdb_00001c8c

1CA5 | pdb_00001ca5

1CA6 | pdb_00001ca6

1CC3 | pdb_00001cc3

1D21 | pdb_00001d21

1D22 | pdb_00001d22

1D8X | pdb_00001d8x

1D9R | pdb_00001d9r

1DCR | pdb_00001dcr

1DNO | pdb_00001dno

1DNT | pdb_00001dnt

1DNX | pdb_00001dnx

1DNZ | pdb_00001dnz

1DSC | pdb_00001dsc

1DSD | pdb_00001dsd

1FD5 | pdb_00001fd5

1FDG | pdb_00001fdg

1I3W | pdb_00001i3w