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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Spadiut, O."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Trametes ochracea (18)
	Bacteroides ovatus (7)
	Paenibacillus polymyxa (4)
	Phanerodontia chrysosporium (3)
	Armoracia rusticana (1)
	Bacteroides ovatus ATCC 8483 (1)
	Leucoagaricus meleagris (1)
	Methanothermobacter marburgensis str. Marburg (1)

Taxonomy

	Eukaryota (23)
	Bacteria (12)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (25)
	2.0 - 2.5 (10)

Release Date

	2010 - 2014 (28)
	2015 - 2019 (7)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (23)
	Hydrolases (12)

Symmetry Type

	Dihedral (21)
	Asymmetric (14)
	Cyclic (1)

SCOP Classification

	All beta proteins (4)
	Artifacts (4)

AllSelected

1 to 25 of 36 Structures

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Explore in 3D

2YIH \| pdb_00002yih	Download File View File

Structure of a Paenibacillus polymyxa Xyloglucanase from GH family 44 with Xyloglucan

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	CA, CL, EDO, SO4
Unique branched monosaccharides	BGC, XYS

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2YJQ \| pdb_00002yjq	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	CA, CL, EDO, OXZ, PGE, SO4
Unique branched monosaccharides	BGC

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2YKK \| pdb_00002ykk	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	BTB, CA, CL, PG4, SO4

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3LSH \| pdb_00003lsh	Download File View File

Pyranose 2-oxidase T169A, monoclinic

Divne, C., Tan, T.C., Spadiut, O.

(2010) J Mol Biology 402: 578-594

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FAD, MES

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3LSI \| pdb_00003lsi	Download File View File

Pyranose 2-oxidase T169A, tetragonal

Tan, T.C., Spadiut, O., Divne, C.

(2010) J Mol Biology 402: 578-594

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FAD

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3LSK \| pdb_00003lsk	Download File View File

Pyranose 2-oxidase T169S acetate complex

Tan, T.C., Spadiut, O., Divne, C.

(2010) J Mol Biology 402: 578-594

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, ACT, FAD

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3LSM \| pdb_00003lsm	Download File View File

Pyranose 2-oxidase H167A mutant with flavin N(5) sulfite adduct

Tan, T.C., Spadiut, O., Divne, C.

(2010) J Mol Biology 402: 578-594

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, GLC, SFD, SO3

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3ZMR \| pdb_00003zmr	Download File View File

Bacteroides ovatus GH5 xyloglucanase in complex with a XXXG heptasaccharide

Larsbrink, J., Rogers, T.E., Hemsworth, G.R., McKee, L.S., Spadiut, O., Klinter, S., Pudlo, N.A., Urs, K., Kelly, A.G., Cederholm, S.N., Davies, G.J., Martens, E.C., Brumer, H.

(2014) Nature 506: 498

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Bacteroides ovatus
Macromolecule	CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) (protein)
Unique Ligands	BTB, EDO, GLC
Unique branched monosaccharides	BGC, GLO, XYS

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3ZQ9 \| pdb_00003zq9	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Paenibacillus polymyxa
Macromolecule	XYLOGLUCANASE (protein)
Unique Ligands	BGC, CA, CL, EDO, NOY, SO4

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4H7U \| pdb_00004h7u	Download File View File

Crystal structure of pyranose dehydrogenase from Agaricus meleagris, wildtype

Tan, T.C., Spadiut, O., Divne, C.

(2013) PLoS One 8: e53567-e53567

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Leucoagaricus meleagris
Macromolecule	Pyranose dehydrogenase (protein)
Unique Ligands	FED, NAG, PO4
Unique branched monosaccharides	NAG

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4MIF \| pdb_00004mif	Download File View File

Pyranose 2-oxidase from Phanerochaete chrysosporium, wild type from natural source

Hassan, N., Tan, T.C., Spadiut, O., Pisanelli, I., Fusco, L., Haltrich, D., Peterbauer, C., Divne, C.

(2013) FEBS Open Bio 3: 496-504

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, MG

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4MIG \| pdb_00004mig	Download File View File

Pyranose 2-oxidase from Phanerochaete chrysosporium, recombinant wild type

Hassan, N., Tan, T.C., Spadiut, O., Pisanelli, I., Fusco, L., Haltrich, D., Peterbauer, C., Divne, C.

(2013) FEBS Open Bio 3: 496-504

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G3F, MN

Explore in 3D

4MIH \| pdb_00004mih	Download File View File

Pyranose 2-oxidase from Phanerochaete chrysosporium, recombinant H158A mutant

Hassan, N., Tan, T.C., Spadiut, O., Pisanelli, I., Fusco, L., Haltrich, D., Peterbauer, C., Divne, C.

(2013) FEBS Open Bio 3: 496-504

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FAD, G3F

Explore in 3D

4MOE \| pdb_00004moe	Download File View File

Pyranose 2-oxidase H450G mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, FDA, G3F, MES

Explore in 3D

4MOF \| pdb_00004mof	Download File View File

Pyranose 2-oxidase H450G mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G2F

Explore in 3D

4MOG \| pdb_00004mog	Download File View File

Pyranose 2-oxidase V546C mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G3F

Explore in 3D

4MOH \| pdb_00004moh	Download File View File

Pyranose 2-oxidase V546C mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, MES, SHG

Explore in 3D

4MOI \| pdb_00004moi	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 3-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, G3F

Explore in 3D

4MOJ \| pdb_00004moj	Download File View File

Pyranose 2-oxidase H450G/V546C double mutant with 2-fluorinated glucose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	1PE, FDA, G2F, MES

Explore in 3D

4MOK \| pdb_00004mok	Download File View File

Pyranose 2-oxidase H167A mutant soaked with 3-fluorinated galactose (not bound)

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, FAD, MES

Explore in 3D

4MOL \| pdb_00004mol	Download File View File

Pyranose 2-oxidase H167A mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, 2FG, FAD, MES

Explore in 3D

4MOM \| pdb_00004mom	Download File View File

Pyranose 2-oxidase H450G mutant with 3-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	1PE, 2H5, FDA, MES

Explore in 3D

4MOO \| pdb_00004moo	Download File View File

Pyranose 2-oxidase H450G mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	FDA, GAF

Explore in 3D

4MOP \| pdb_00004mop	Download File View File

Pyranose 2-oxidase V546C mutant with 3-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	12P, 2H5, FDA, MES

Explore in 3D

4MOQ \| pdb_00004moq	Download File View File

Pyranose 2-oxidase V546C mutant with 2-fluorinated galactose

Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

(2014) PLoS One 9: e86736-e86736

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trametes ochracea
Macromolecule	Pyranose 2-oxidase (protein)
Unique Ligands	2FG, FDA, MES

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YIH | pdb_00002yih

2YJQ | pdb_00002yjq

2YKK | pdb_00002ykk

3LSH | pdb_00003lsh

3LSI | pdb_00003lsi

3LSK | pdb_00003lsk

3LSM | pdb_00003lsm

3ZMR | pdb_00003zmr

3ZQ9 | pdb_00003zq9

4H7U | pdb_00004h7u

4MIF | pdb_00004mif

4MIG | pdb_00004mig

4MIH | pdb_00004mih

4MOE | pdb_00004moe

4MOF | pdb_00004mof

4MOG | pdb_00004mog

4MOH | pdb_00004moh

4MOI | pdb_00004moi

4MOJ | pdb_00004moj

4MOK | pdb_00004mok

4MOL | pdb_00004mol

4MOM | pdb_00004mom

4MOO | pdb_00004moo

4MOP | pdb_00004mop

4MOQ | pdb_00004moq