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240,177
Structures from the PDB archive

1,068,577
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QUERY: Structure Author = "Structure 2 Function Project (S2F)"

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Haemophilus influenzae (28)
	Escherichia coli (13)
	Haemophilus influenzae Rd KW20 (8)
	Escherichia coli O157:H7 (2)
	Bradyrhizobium elkanii (1)
	Escherichia coli K-12 (1)
	Homo sapiens (1)
	Pseudomonas aeruginosa (1)
	Pseudomonas aeruginosa PAO1 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (53)
	Eukaryota (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (47)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (54)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (18)
	2.0 - 2.5 (19)
	2.5 - 3.0 (5)

Release Date

	2000 - 2004 (43)
	2005 - 2009 (9)
	2010 - 2014 (2)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (5)
	Lyases (5)
	Ligases (1)
	Isomerases (1)

Symmetry Type

	Asymmetric (28)
	Cyclic (25)
	Dihedral (8)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	Alpha and beta proteins (a+b) (25)
	All alpha proteins (5)
	All beta proteins (6)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 54 Structures

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1DBU \| pdb_00001dbu	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)
Unique Ligands	HG

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1DBX \| pdb_00001dbx	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)

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1FL9 \| pdb_00001fl9	Download File View File

THE YJEE PROTEIN

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2002) Proteins 48: 220-226

Released	2002-08-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0065 (protein)
Unique Ligands	HG

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1HTW \| pdb_00001htw	Download File View File

COMPLEX OF HI0065 WITH ADP AND MAGNESIUM

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2002) Proteins 48: 220-226

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	HI0065 (protein)
Unique Ligands	ACT, ADP, MG, NA

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1IM8 \| pdb_00001im8	Download File View File

Crystal structure of YecO from Haemophilus influenzae (HI0319), a methyltransferase with a bound S-adenosylhomocysteine

Lim, K., Zhang, H., Tempczyk, A., Bonander, N., Toedt, J., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2001) Proteins 45: 397-407

Released	2001-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YecO (protein)
Unique Ligands	CL, SAI

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1IMU \| pdb_00001imu	Download File View File

Solution Structure of HI0257, a Ribosome Binding Protein

Parsons, L., Eisenstein, E., Orban, J., Structure 2 Function Project (S2F)

(2001) Biochemistry 40: 10979-10986

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0257 (protein)

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1IN0 \| pdb_00001in0	Download File View File

YAJQ PROTEIN (HI1034)

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) J Struct Funct Genomics 4: 1-9

Released	2003-06-10
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Haemophilus influenzae
Macromolecule	YAJQ PROTEIN (protein)
Unique Ligands	HG, MMC, NA

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1IZM \| pdb_00001izm	Download File View File

Structure of ygfB from Haemophilus influenzae (HI0817), a Conserved Hypothetical Protein

Galkin, A., Sarikaya, E., Lehmann, C., Howard, A., Herzberg, O., Structure 2 Function Project (S2F)

(2004) Proteins 57: 874-877

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0817 (protein)

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1J7G \| pdb_00001j7g	Download File View File

Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2003) J Biological Chem 278: 13496-13502

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	D-tyrosyl-tRNA(Tyr) deacylase (protein)

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1J7H \| pdb_00001j7h	Download File View File

Solution Structure of HI0719, a Hypothetical Protein From Haemophilus Influenzae

Parsons, L., Bonander, N., Eisenstein, E., Gilson, M., Kairys, V., Orban, J., Structure 2 Function Project (S2F)

(2003) Biochemistry 42: 80-89

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0719 (protein)

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1J85 \| pdb_00001j85	Download File View File

Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)

Lim, K., Zhang, H., Toedt, J., Tempcyzk, A., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 51: 56-67

Released	2003-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YibK (protein)

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1J8B \| pdb_00001j8b	Download File View File

Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function

Lim, K., Tempcyzk, A., Toedt, J., Parsons, J.F., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 50: 375-379

Released	2003-01-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	YbaB (protein)

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1J8D \| pdb_00001j8d	Download File View File

Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	GOL

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1J9A \| pdb_00001j9a	Download File View File

OLIGORIBONUCLEASE

Bonander, N., Tordova, M., Ladner, J.E., Eisenstein, E., Gilliland, G.L., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haemophilus influenzae
Macromolecule	OLIGORIBONUCLEASE (protein)
Unique Ligands	SO4

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1JAL \| pdb_00001jal	Download File View File

YCHF PROTEIN (HI0393)

Teplyakov, A., Gilliland, G.L., Structure 2 Function Project (S2F)

(2003) J Bacteriol 185: 4031-4037

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae
Macromolecule	YchF protein (protein)

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1JJV \| pdb_00001jjv	Download File View File

DEPHOSPHO-COA KINASE IN COMPLEX WITH ATP

Obmolova, G., Teplyakov, A., Bonander, N., Eisenstein, E., Howard, A.J., Gilliland, G.L., Structure 2 Function Project (S2F)

(2001) J Struct Biol 136: 119-125

Released	2002-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae
Macromolecule	DEPHOSPHO-COA KINASE (protein)
Unique Ligands	ATP, HG, SO4

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1JN1 \| pdb_00001jn1	Download File View File

Structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Haemophilus influenzae (HI0671)

Lehmann, C., Lim, K., Toedt, J., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 49: 135-138

Released	2002-08-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Haemophilus influenzae
Macromolecule	2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE (protein)
Unique Ligands	CO, SO4

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1JO0 \| pdb_00001jo0	Download File View File

Structure of HI1333, a Hypothetical Protein from Haemophilus influenzae with Structural Similarity to RNA-binding Proteins

Willis, M.A., Krajewski, W., Chalamasetty, V.R., Reddy, P., Howard, A., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 49: 423-426

Released	2002-11-20
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI1333 (protein)
Unique Ligands	GOL

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1JOE \| pdb_00001joe	Download File View File

Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae

Chen, C.C.H., Parsons, J.F., Lim, K., Lehmann, C., Tempczyk, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

To be published

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN (protein)
Unique Ligands	HG, ZN

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1JOG \| pdb_00001jog	Download File View File

Structure of HI0074 from Heamophilus Influenzae reveals the fold of a substrate binding domain of a nucleotidyltransferase

Lehmann, C., Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2003) Proteins 50: 249-260

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haemophilus influenzae
Macromolecule	HYPOTHETICAL PROTEIN HI0074 (protein)

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1JOP \| pdb_00001jop	Download File View File

YHCH protein (HI0227)

Teplyakov, A., Obmolova, G., Gilliland, G.L., Structure 2 Function Project (S2F)

(2005) J Bacteriol 187: 5520-5527

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Haemophilus influenzae
Macromolecule	Yhch protein (protein)
Unique Ligands	HG

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1JOS \| pdb_00001jos	Download File View File

Ribosome Binding Factor A(rbfA)

Bonander, N., Tordova, M., Howard, A.J., Eisenstein, E., Gilliland, G.L., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	RIBOSOME-BINDING FACTOR A (protein)

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1JOV \| pdb_00001jov	Download File View File

Crystal Structure Analysis of HI1317

Bonander, N., Tordova, M., Howard, A.J., Eisenstein, E., Gilliland, G., Structure 2 Function Project (S2F)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Haemophilus influenzae
Macromolecule	HI1317 (protein)
Unique Ligands	SO4, TRS

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1K1E \| pdb_00001k1e	Download File View File

Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)

Lim, K., Herzberg, O., Structure 2 Function Project (S2F)

(2002) Proteins 46: 393-404

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	deoxy-D-mannose-octulosonate 8-phosphate phosphatase (protein)
Unique Ligands	CO, GOL, HG, MES, SO4