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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Volkers, G."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Bacteroides thetaiotaomicron (7)
	Homo sapiens (5)
	Escherichia coli (4)
	Cutibacterium acnes (2)

Taxonomy

	Bacteria (13)
	Eukaryota (5)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (11)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (11)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (5)
	Oxidoreductases (7)
	Hydrolases (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (9)

SCOP Classification

	All alpha proteins (3)
	Artifacts (1)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

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2X6O \| pdb_00002x6o	Download File View File

Tet Repressor class D in complex with 7-chlor-2-cyano-iso- tetracycline

Volkers, G., Hinrichs, W.

(2011) J Med Chem 54: 5108

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	2TC, CL

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2X9D \| pdb_00002x9d	Download File View File

Tet repressor (class D) in complex with iso-7-chlortetracycline

Volkers, G., Hinrichs, W.

(2011) J Med Chem 54: 5108

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)
Unique Ligands	CL, ITC

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2XDO \| pdb_00002xdo	Download File View File

Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron

Volkers, G., Palm, G.J., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, SO4

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2XYO \| pdb_00002xyo	Download File View File

Structural basis for a new tetracycline resistance mechanism relying on the TetX monooxygenase

Volkers, G., Palm, G.J., Weiss, M.S., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 (protein)
Unique Ligands	FAD, GOL, SO4

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2Y6Q \| pdb_00002y6q	Download File View File

Structure of the TetX monooxygenase in complex with the substrate 7- Iodtetracycline

Volkers, G., Palm, G.J., Weiss, M.S., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, I7T, SO4

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2Y6R \| pdb_00002y6r	Download File View File

Structure of the TetX monooxygenase in complex with the substrate 7- chlortetracycline

Volkers, G., Palm, G.J., Weiss, M.S., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	CTC, FAD, SO4

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4A6N \| pdb_00004a6n	Download File View File

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH TIGECYCLINE

Volkers, G., Palm, G.J., Weiss, M.S., Hinrichs, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1758

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, SO4, T1C

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4A99 \| pdb_00004a99	Download File View File

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH MINOCYCLINE

Volkers, G., Palm, G.J., Weiss, M.S., Hinrichs, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1758

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, MIY, SO4

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4ABZ \| pdb_00004abz	Download File View File

TetR(D) in Complex with Tigecycline and Magnesium, co-crystallized

Volkers, G., Hinrichs, W.

To be published

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.886 Å
Organisms	Escherichia coli
Macromolecule	Tetracycline repressor protein class D (protein)
Unique Ligands	CL, MG, T1C

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4AC0 \| pdb_00004ac0	Download File View File

TETR(B) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM

Volkers, G., Hinrichs, W.

To be published

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON TN1 0 (protein)
Unique Ligands	MG, MIY, PO4

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4GUV \| pdb_00004guv	Download File View File

TetX derivatized with Xenon

Volkers, G., Palm, G.J., Panjikar, S., Hinrichs, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1758-1767

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TetX2 protein (protein)
Unique Ligands	FAD, SO4, XE

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5BO6 \| pdb_00005bo6	Download File View File

Structure of human sialyltransferase ST8SiaIII in complex with CDP

Volkers, G., Worrall, L., Strynadka, N.C.J.

(2015) Nat Struct Mol Biol 22: 627-635

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (protein)
Unique Ligands	CDP, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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5BO7 \| pdb_00005bo7	Download File View File

Structure of human sialyltransferase ST8SiaIII in complex with CTP

Volkers, G., Worrall, L., Strynadka, N.C.J.

(2015) Nat Struct Mol Biol 22: 627-635

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (protein)
Unique Ligands	CTP, NAG
Unique branched monosaccharides	FUC, NAG

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5BO8 \| pdb_00005bo8	Download File View File

Structure of human sialyltransferase ST8SiaIII

Volkers, G., Worrall, L., Strynadka, N.C.J.

(2015) Nat Struct Mol Biol 22: 627-635

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (protein)
Unique Ligands	CIT, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5BO9 \| pdb_00005bo9	Download File View File

Structure of human sialyltransferase ST8SiaIII in complex with CMP-3FNeu5Ac and Sia-6S-LacNAc

Volkers, G., Worrall, L., Strynadka, N.C.J.

(2015) Nat Struct Mol Biol 22: 627-635

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (protein)
Unique Ligands	CSF, NAG
Unique branched monosaccharides	FUC, GAL, NAG, NGS, SIA

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5CXY \| pdb_00005cxy	Download File View File

Structure of a Glycosyltransferase in Complex with Inhibitor

Volkers, G., Strynadka, N.C.J.

To be published

Released	2016-09-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (protein)
Unique Ligands	55T, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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7LBU \| pdb_00007lbu	Download File View File

Crystal structure of the Propionibacterium acnes surface sialidase

Yu, A.C.Y., Volkers, G., Strynadka, N.C.J.

(2022) Glycobiology 32: 162-170

Released	2021-12-08
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Cutibacterium acnes
Macromolecule	Exo-alpha-sialidase (protein)
Unique Ligands	ACT, PO4

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7LBV \| pdb_00007lbv	Download File View File

Crystal structure of the Propionibacterium acnes surface sialidase in complex with Neu5Ac2en

Yu, A.C.Y., Volkers, G., Strynadka, N.C.J.

(2022) Glycobiology 32: 162-170

Released	2021-12-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cutibacterium acnes
Macromolecule	Exo-alpha-sialidase (protein)
Unique Ligands	DAN, PO4

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2X6O | pdb_00002x6o

Tet Repressor class D in complex with 7-chlor-2-cyano-iso- tetracycline

2X9D | pdb_00002x9d

Tet repressor (class D) in complex with iso-7-chlortetracycline

2XDO | pdb_00002xdo

Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron

2XYO | pdb_00002xyo

Structural basis for a new tetracycline resistance mechanism relying on the TetX monooxygenase

2Y6Q | pdb_00002y6q

Structure of the TetX monooxygenase in complex with the substrate 7- Iodtetracycline

2Y6R | pdb_00002y6r

Structure of the TetX monooxygenase in complex with the substrate 7- chlortetracycline

4A6N | pdb_00004a6n

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH TIGECYCLINE

4A99 | pdb_00004a99

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH MINOCYCLINE

4ABZ | pdb_00004abz

TetR(D) in Complex with Tigecycline and Magnesium, co-crystallized

4AC0 | pdb_00004ac0

TETR(B) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM

4GUV | pdb_00004guv

TetX derivatized with Xenon

5BO6 | pdb_00005bo6

Structure of human sialyltransferase ST8SiaIII in complex with CDP

5BO7 | pdb_00005bo7

Structure of human sialyltransferase ST8SiaIII in complex with CTP

5BO8 | pdb_00005bo8

Structure of human sialyltransferase ST8SiaIII

5BO9 | pdb_00005bo9

Structure of human sialyltransferase ST8SiaIII in complex with CMP-3FNeu5Ac and Sia-6S-LacNAc

5CXY | pdb_00005cxy

Structure of a Glycosyltransferase in Complex with Inhibitor

7LBU | pdb_00007lbu

Crystal structure of the Propionibacterium acnes surface sialidase

7LBV | pdb_00007lbv

Crystal structure of the Propionibacterium acnes surface sialidase in complex with Neu5Ac2en

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2X6O | pdb_00002x6o

2X9D | pdb_00002x9d

2XDO | pdb_00002xdo

2XYO | pdb_00002xyo

2Y6Q | pdb_00002y6q

2Y6R | pdb_00002y6r

4A6N | pdb_00004a6n

4A99 | pdb_00004a99

4ABZ | pdb_00004abz

4AC0 | pdb_00004ac0

4GUV | pdb_00004guv

5BO6 | pdb_00005bo6

5BO7 | pdb_00005bo7

5BO8 | pdb_00005bo8

5BO9 | pdb_00005bo9

5CXY | pdb_00005cxy

7LBU | pdb_00007lbu

7LBV | pdb_00007lbv