RCSB PDB: Search

6TK1 \| pdb_00006tk1	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 20ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK2 \| pdb_00006tk2	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK3 \| pdb_00006tk3	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 30us+150us structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK4 \| pdb_00006tk4	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ns+16ns structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK5 \| pdb_00006tk5	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 800fs+2ps structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK6 \| pdb_00006tk6	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in neutral conditions with attached light datasets at 800fs, 2ps, 100ps, 1ns, 16ns, 1us, 30us, 150us, 1ms and 20ms

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK7 \| pdb_00006tk7	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in acidic conditions

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6ZWB \| pdb_00006zwb	Download File View File

Z-SBTub3 photoswitch bound to tubulin-DARPin D1 complex

Wranik, M., Weinert, T., Olieric, N., Gao, L., Kraus, Y.C.M., Bingham, R., Ntouliou, E., Ahlfeld, J., Thorn-Seshold, O., Steinmetz, M.O., Standfuss, J.

(2021) Cell Chem Biol 28: 228

Released	2020-12-23
Method	X-RAY DIFFRACTION 1.747 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, QRN

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6ZWC \| pdb_00006zwc	Download File View File

Z-SBTub2 photoswitch bound to tubulin-DARPin D1 complex

Wranik, M., Weinert, T., Olieric, N., Gao, L., Kraus, Y.C.M., Bingham, R., Ntouliou, E., Ahlfeld, J., Thorn-Seshold, O., Steinmetz, M.O., Standfuss, J.

(2021) Cell Chem Biol 28: 228

Released	2020-12-23
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, QRQ

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7AC5 \| pdb_00007ac5	Download File View File

Structure of Tubulin Darpin complex 1 collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Olieric, N., Wranik, M., Padeste, C., Karpik, A., Huang, C.Y., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Bos taurus
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, PG0

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7O8F \| pdb_00007o8f	Download File View File

NmHR dark state structure determined by serial femtosecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8G \| pdb_00007o8g	Download File View File

NmHR light state structure at 10 ps after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8H \| pdb_00007o8h	Download File View File

NmHR light state structure at 10 ns after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8I \| pdb_00007o8i	Download File View File

NmHR light state structure at 1 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8J \| pdb_00007o8j	Download File View File

NmHR light state structure at 20 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8K \| pdb_00007o8k	Download File View File

NmHR light state structure at 300 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8L \| pdb_00007o8l	Download File View File

NmHR dark state structure determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8M \| pdb_00007o8m	Download File View File

NmHR light state structure at 2.5 ms (0 - 5 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8N \| pdb_00007o8n	Download File View File

NmHR light state structure at 7.5 ms (5 - 10 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8O \| pdb_00007o8o	Download File View File

NmHR light state structure at 12.5 ms (10 - 15 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8P \| pdb_00007o8p	Download File View File

NmHR light state structure at 17.5 ms (15 - 20 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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7O8Q \| pdb_00007o8q	Download File View File

NmHR light state structure at 22.5 ms (20 - 25 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8R \| pdb_00007o8r	Download File View File

NmHR light state structure at 27.5 ms (25 - 30 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8S \| pdb_00007o8s	Download File View File

NmHR light state structure at 32.5 ms (30 - 35 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8T \| pdb_00007o8t	Download File View File

NmHR light state structure at 37.5 ms (35 - 40 ms) after photoexcitation determined by serial millisecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

6TK1 | pdb_00006tk1

6TK2 | pdb_00006tk2

6TK3 | pdb_00006tk3

6TK4 | pdb_00006tk4

6TK5 | pdb_00006tk5

6TK6 | pdb_00006tk6

6TK7 | pdb_00006tk7

6ZWB | pdb_00006zwb

6ZWC | pdb_00006zwc

7AC5 | pdb_00007ac5

7O8F | pdb_00007o8f

7O8G | pdb_00007o8g

7O8H | pdb_00007o8h

7O8I | pdb_00007o8i

7O8J | pdb_00007o8j

7O8K | pdb_00007o8k

7O8L | pdb_00007o8l

7O8M | pdb_00007o8m

7O8N | pdb_00007o8n

7O8O | pdb_00007o8o

7O8P | pdb_00007o8p

7O8Q | pdb_00007o8q

7O8R | pdb_00007o8r

7O8S | pdb_00007o8s

7O8T | pdb_00007o8t