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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yildiz, O."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Methanothermobacter thermautotrophicus (12)
	Fusobacterium nucleatum (5)
	Arabidopsis thaliana (4)
	Homo sapiens (4)
	Archaea (2)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	Methanothermobacter thermautotrophicus str. Delta H (2)
	Nostoc sp. PCC 7120 = FACHB-418 (2)
	Escherichia coli str. K-12 substr. W3110 (1)

More...

Taxonomy

	Archaea (16)
	Bacteria (12)
	Eukaryota (9)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (33)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	1.5 - 2.0 (19)
	2.0 - 2.5 (9)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (20)
	2005 - 2009 (9)
	2015 - 2019 (4)
	2020 - 2024 (4)

Enzyme Classification Name

	Lyases (17)
	Transferases (3)
	Hydrolases (6)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (3)
	PDBTM (3)

Symmetry Type

	Cyclic (23)
	Asymmetric (15)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (22)
	All alpha proteins (5)
	All beta proteins (2)
	Artifacts (3)
	Small proteins (4)
	Alpha and beta proteins (a+b) (2)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 37 Structures

Page 1 of 2

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1DV7 \| pdb_00001dv7	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)

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1DVJ \| pdb_00001dvj	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1JCH \| pdb_00001jch	Download File View File

Crystal Structure of Colicin E3 in Complex with its Immunity Protein

Soelaiman, S., Jakes, K., Wu, N., Li, C., Shoham, M.

(2001) Mol Cell 8: 1053-1062

Released	2001-11-30
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	COLICIN E3 (protein) COLICIN E3 IMMUNITY PROTEIN (protein)
Unique Ligands	CIT, GOL

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1KLY \| pdb_00001kly	Download File View File

Orotidine monophosphate decarboxylase D70G mutant complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KLZ \| pdb_00001klz	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70A complexed with UMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, U5P

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1KM0 \| pdb_00001km0	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM1 \| pdb_00001km1	Download File View File

Orotidine monophosphate decarboxylase mutant S127A crystal structure

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM2 \| pdb_00001km2	Download File View File

crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM3 \| pdb_00001km3	Download File View File

crystal structure of ODCase mutant K42A complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM4 \| pdb_00001km4	Download File View File

crystal structure of ODCase mutant K72A complexed with UMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	U5P

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1KM5 \| pdb_00001km5	Download File View File

Crystal structure of ODCase mutant D75N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, UP6

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1KM6 \| pdb_00001km6	Download File View File

Crystal structure of ODCase mutant D70AK72A complexed with OMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	OMP

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1LOL \| pdb_00001lol	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complex with XMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	BU2, XMP

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1LOQ \| pdb_00001loq	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complexed with product UMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Archaea
Macromolecule	orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	U5P

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1LOR \| pdb_00001lor	Download File View File

crystal structure of orotidine 5'-monophosphate complexed with BMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	BMP

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1LOS \| pdb_00001los	Download File View File

crystal structure of orotidine monophosphate decarboxylase mutant deltaR203A complexed with 6-azaUMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	UP6

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1LP6 \| pdb_00001lp6	Download File View File

Crystal structure of orotidine monophosphate decarboxylase complexed with CMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Archaea
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	C5P

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1R5P \| pdb_00001r5p	Download File View File

Crystal Structure Analysis of KaiB from PCC7120

Garces, R.G., Wu, N., Gillon, W., Pai, E.F.

(2004) EMBO J 23: 1688-1698

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	circadian oscillation regulator (protein)

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1R5Q \| pdb_00001r5q	Download File View File

Crystal Structure Analysis of Kai A from PCC7120

Garces, R.G., Wu, N., Gillon, W., Pai, E.F.

(2004) EMBO J 23: 1688-1698

Released	2004-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	circadian oscillation regulator (protein)

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1T6H \| pdb_00001t6h	Download File View File

Crystal Structure T4 Lysozyme incorporating an unnatural amino acid p-iodo-L-phenylalanine at position 153

Spraggon, G., Xie, J., Wang, L., Wu, N., Brock, A., Schultz, P.G.

(2004) Nat Biotechnol 22: 1297-1301

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, CL

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1YRK \| pdb_00001yrk	Download File View File

The C2 Domain of PKC<delta> is a new Phospho-Tyrosine Binding Domain

Benes, C.H., Wu, N., Elia, A.E., Dharia, T., Cantley, L.C., Soltoff, S.P.

(2005) Cell 121: 271-280

Released	2005-07-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	13-residue peptide (protein) Protein kinase C, delta type (protein)
Unique Ligands	ACY

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1YTV \| pdb_00001ytv	Download File View File

Maltose-binding protein fusion to a C-terminal fragment of the V1a vasopressin receptor

Adikesavan, N.V., Mahmood, S.S., Stanley, S., Xu, Z., Wu, N., Thibonnier, M., Shoham, M.

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 341-345

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Maltose-binding periplasmic protein (protein) Vasopressin V1a receptor (protein)
Unique branched monosaccharides	GLC

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2GL2 \| pdb_00002gl2	Download File View File

Crystal structure of the tetra mutant (T66G,R67G,F68G,Y69G) of bacterial adhesin FadA

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1215-1217

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Fusobacterium nucleatum
Macromolecule	adhesion A (protein)

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3BJF \| pdb_00003bjf	Download File View File

Pyruvate kinase M2 is a phosphotyrosine binding protein

Wu, N.

(2008) Nature 452: 181-186

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase isozymes M1/M2 (protein)
Unique Ligands	FBP, K, MG, OXL