RCSB PDB: Search

6S0L \| pdb_00006s0l	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	A2a adenosine receptor (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S0Q \| pdb_00006s0q	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from 50,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S19 \| pdb_00006s19	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.Ch.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1D \| pdb_00006s1d	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from 20,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1E \| pdb_00006s1e	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1G \| pdb_00006s1g	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from 50,000 diffraction patterns.

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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7YC7 \| pdb_00007yc7	Download File View File

Dark, fully reduced structure of the MmCPDII-DNA complex as produced at SwissFEL

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YCM \| pdb_00007ycm	Download File View File

TR-SFX MmCPDII-DNA complex: 100 ps snapshot. Includes 100ps, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YCP \| pdb_00007ycp	Download File View File

TR-SFX MmCPDII-DNA complex: 250 ps snapshot. Includes 250 ps, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YCR \| pdb_00007ycr	Download File View File

TR-SFX MmCPDII-DNA complex: 450 ps snapshot. Includes 450ps, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YD6 \| pdb_00007yd6	Download File View File

TR-SFX MmCPDII-DNA complex: 650 ps snapshot. Includes 650ps, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YD7 \| pdb_00007yd7	Download File View File

TR-SFX MmCPDII-DNA complex: 1 ns snapshot. Includes 1 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YD8 \| pdb_00007yd8	Download File View File

TR-SFX MmCPDII-DNA complex: 2 ns snapshot. Includes 2 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YDZ \| pdb_00007ydz	Download File View File

TR-SFX MmCPDII-DNA complex: dark state as collected in SACLA

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YE0 \| pdb_00007ye0	Download File View File

DF-SFX MmCPDII-DNA complex: steady state oxidized complex

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEB \| pdb_00007yeb	Download File View File

TR-SFX MmCPDII-DNA complex: 3.35 ns snapshot. Includes 3.35 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA (nucleic acid) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEC \| pdb_00007yec	Download File View File

TR-SFX MmCPDII-DNA complex: 6 ns snapshot. Includes 6 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEE \| pdb_00007yee	Download File View File

TR-SFX MmCPDII-DNA complex: 10 ns snapshot. Includes 10 ns, dark, and extrapolated structure factors. Collected at SwissFEL

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEI \| pdb_00007yei	Download File View File

TR-SFX MmCPDII-DNA complex: 10 ns time-point collected in SACLA. Includes 10 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photolyase (protein) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEJ \| pdb_00007yej	Download File View File

TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEK \| pdb_00007yek	Download File View File

TR-SFX MmCPDII-DNA complex: 500 ns time-point collected in SACLA. Includes 500 ns, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEL \| pdb_00007yel	Download File View File

TR-SFX MmCPDII-DNA complex: 25 us time-point collected in SACLA. Includes 25 us, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YEM \| pdb_00007yem	Download File View File

TR-SFX MmCPDII-DNA complex: 200 us time-point collected in SACLA. Includes 200 us, dark, and extrapolated structure factors

Maestre-Reyna, M., Wang, P.-H., Nango, E., Hosokawa, Y., Saft, M., Furrer, A., Yang, C.-H., Ngura Putu, E.P.G., Wu, W.-J., Emmerich, H.-J., Engilberge, S., Caramello, N., Wranik, M., Glover, H.L., Franz-Badur, S., Wu, H.-Y., Lee, C.-C., Huang, W.-C., Huang, K.-F., Chang, Y.-K., Liao, J.-H., Weng, J.-H., Gad, W., Chang, C.-W., Pang, A.H., Gashi, D., Beale, E., Ozerov, D., Milne, C., Cirelli, C., Bacellar, C., Sugahara, M., Owada, S., Joti, Y., Yamashita, A., Tanaka, R., Tanaka, T., Luo, F.J., Tono, K., Kiontke, S., Spadaccini, R., Royant, A., Yamamoto, J., Iwata, S., Standfuss, J., Essen, L.-O., Bessho, Y., Tsai, M.-D.

(2023) Science 382: eadd7795-eadd7795

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanosarcina mazei Go1 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein) CPD photolesion containing DNA after repair (nucleic acid) complementary oligonucleotide to the CPD containing DNA (nucleic acid)
Unique Ligands	FAD, SO4

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7YYY \| pdb_00007yyy	Download File View File

Molecular snapshots of drug release from tubulin: 1 microsecond after photoactivation

Wranik, M., Weinert, T., Standfuss, J.

(2023) Nat Commun 14: 903-903

Released	2023-02-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	CA, GDP, GTP, MG, VYT

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7YYZ \| pdb_00007yyz	Download File View File

Molecular snapshots of drug release from tubulin: 10 microseconds after photoactivation.

Wranik, M., Weinert, T., Standfuss, J.

(2023) Nat Commun 14: 903-903

Released	2023-02-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	CA, GDP, GTP, MG, VYT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

6S0L | pdb_00006s0l

6S0Q | pdb_00006s0q

6S19 | pdb_00006s19

6S1D | pdb_00006s1d

6S1E | pdb_00006s1e

6S1G | pdb_00006s1g

7YC7 | pdb_00007yc7

7YCM | pdb_00007ycm

7YCP | pdb_00007ycp

7YCR | pdb_00007ycr

7YD6 | pdb_00007yd6

7YD7 | pdb_00007yd7

7YD8 | pdb_00007yd8

7YDZ | pdb_00007ydz

7YE0 | pdb_00007ye0

7YEB | pdb_00007yeb

7YEC | pdb_00007yec

7YEE | pdb_00007yee

7YEI | pdb_00007yei

7YEJ | pdb_00007yej

7YEK | pdb_00007yek

7YEL | pdb_00007yel

7YEM | pdb_00007yem

7YYY | pdb_00007yyy

7YYZ | pdb_00007yyz