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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Baiga, T.J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (17)
	Ocimum basilicum (7)
	Cereibacter sphaeroides (6)
	Clarkia breweri (1)

Taxonomy

	Eukaryota (25)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (23)
	2.0 - 2.5 (8)

Release Date

	2005 - 2009 (14)
	2015 - 2019 (17)

Enzyme Classification Name

	Lyases (6)
	Oxidoreductases (8)

Symmetry Type

	Asymmetric (23)
	Dihedral (6)
	Cyclic (3)

SCOP Classification

	All alpha proteins (17)
	Alpha and beta proteins (a/b) (7)

AllSelected

1 to 25 of 31 Structures

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2O6Y \| pdb_00002o6y	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)

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2O78 \| pdb_00002o78	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides (His89Phe variant) complexed with cinnamic acid

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)
Unique Ligands	TCA

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2O7B \| pdb_00002o7b	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides, complexed with coumarate

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)
Unique Ligands	HC4

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2O7D \| pdb_00002o7d	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides, complexed with caffeate

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)
Unique Ligands	DHC

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2O7E \| pdb_00002o7e	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides (His89Phe variant), bound to 2-aminoindan-2-phosphonic acid

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)
Unique Ligands	PMI

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2O7F \| pdb_00002o7f	Download File View File

Tyrosine ammonia-lyase from Rhodobacter sphaeroides (His89Phe variant), complexed with coumaric acid

Louie, G.V., Bowman, M.E., Moffitt, M.C., Baiga, T.J., Moore, B.S., Noel, J.P.

(2006) Chem Biol 13: 1327-1338

Released	2007-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Putative histidine ammonia-lyase (protein)
Unique Ligands	HC4

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2QW8 \| pdb_00002qw8	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum

Louie, G.V., Noel, J.P.

(2007) PLoS One 2: e993-e993

Released	2008-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	NAP, NO3, PEG

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2QX7 \| pdb_00002qx7	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum

Louie, G.V., Noel, J.P., Bowman, M.E.

(2007) PLoS One 2: e993-e993

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	NAP

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2QYS \| pdb_00002qys	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum

Louie, G.V., Noel, J.P., Bowman, M.E.

(2007) PLoS One 2: e993-e993

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)

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2QZZ \| pdb_00002qzz	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum

Louie, G.V., Noel, J.P., Bowman, M.E.

(2007) PLoS One 2: e993-e993

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	EMF, NAP

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2R2G \| pdb_00002r2g	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum complexed with EMDF

Louie, G.V., Noel, J.P., Bowman, M.E.

(2007) PLoS One 2: e993-e993

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	EMF, NAP

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2R6J \| pdb_00002r6j	Download File View File

Structure of Eugenol Synthase from Ocimum basilicum

Louie, G.V., Noel, J.P., Bowman, M.E.

(2007) PLoS One 2: e993-e993

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	NDP

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3C1O \| pdb_00003c1o	Download File View File

The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct lineages

Louie, G.V., Noel, J.P., Bowman, M.E.

(2008) Plant J 54: 362-374

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clarkia breweri
Macromolecule	eugenol synthase (protein)
Unique Ligands	NAP

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3C3X \| pdb_00003c3x	Download File View File

The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct lineages

Louie, G.V., Noel, J.P., Bowman, M.E.

(2008) Plant J 54: 362-374

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Ocimum basilicum
Macromolecule	Eugenol synthase 1 (protein)
Unique Ligands	NAP

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5U3Q \| pdb_00005u3q	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 1

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UJ, B7G, CL, K, PEG, PGO

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5U3R \| pdb_00005u3r	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 2

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7V1, B7G, PEG, PGO

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5U3S \| pdb_00005u3s	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 3

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7V4, B7G, K, PEG, PGO

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5U3T \| pdb_00005u3t	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 4

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UY, B7G, PEG, PGE, PGO

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5U3U \| pdb_00005u3u	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 5

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7TV, B7G, PEG, PGO

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5U3V \| pdb_00005u3v	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 6

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7TY, B7G, PEG, PGO

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5U3W \| pdb_00005u3w	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 7

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7U1, B7G, PEG, PGO

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5U3X \| pdb_00005u3x	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 8

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7U4, B7G, PEG, PGO

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5U3Y \| pdb_00005u3y	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 9

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7U7, B7G, PEG, PGO

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5U3Z \| pdb_00005u3z	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 10

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UA, B7G, PEG, PGO

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5U40 \| pdb_00005u40	Download File View File

Human PPARdelta ligand-binding domain in complexed with specific agonist 15

Wu, C.-C., Baiga, T.J., Downes, M., La Clair, J.J., Atkins, A.R., Richard, S.B., Stockley-Noel, T.A., Bowman, M.E., Evans, R.M., Noel, J.P.

(2017) Proc Natl Acad Sci U S A 114: E2563-E2570

Released	2017-03-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	7UD, B7G, PEG, PGO

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2O6Y | pdb_00002o6y

2O78 | pdb_00002o78

2O7B | pdb_00002o7b

2O7D | pdb_00002o7d

2O7E | pdb_00002o7e

2O7F | pdb_00002o7f

2QW8 | pdb_00002qw8

2QX7 | pdb_00002qx7

2QYS | pdb_00002qys

2QZZ | pdb_00002qzz

2R2G | pdb_00002r2g

2R6J | pdb_00002r6j

3C1O | pdb_00003c1o

3C3X | pdb_00003c3x

5U3Q | pdb_00005u3q

5U3R | pdb_00005u3r

5U3S | pdb_00005u3s

5U3T | pdb_00005u3t

5U3U | pdb_00005u3u

5U3V | pdb_00005u3v

5U3W | pdb_00005u3w

5U3X | pdb_00005u3x

5U3Y | pdb_00005u3y

5U3Z | pdb_00005u3z

5U40 | pdb_00005u40