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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Blaazer, A.R."

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Search Summary

This query matches 194 Structures.

Refinements

Structure Determination Methodology

experimental (194)

Scientific Name of Source Organism

	Methanosarcina mazei Go1 (41)
	Homo sapiens (23)
	Thermostichus vulcanus (21)
	synthetic construct (18)
	Aspergillus nidulans FGSC A4 (14)
	Halobacterium salinarum NRC-1 (14)
	Gallus gallus (10)
	Parengyodontium album (10)
	Geobacillus thermodenitrificans NG80-2 (9)
	Tequatrovirus T4 (8)

More...

Taxonomy

	Eukaryota (81)
	Archaea (62)
	Bacteria (52)
	other sequences (18)
	Duplodnaviria (8)
	Riboviria (3)

Experimental Method

X-RAY DIFFRACTION (194)

Polymer Entity Type

	Protein (194)
	DNA (18)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (27)
	1.5 - 2.0 (49)
	2.0 - 2.5 (87)
	2.5 - 3.0 (22)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (7)
	2010 - 2014 (7)
	2015 - 2019 (81)
	2020 - 2024 (99)

Enzyme Classification Name

	Oxidoreductases (52)
	Lyases (42)
	Hydrolases (40)
	Transferases (6)
	Translocases (1)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (68)
	mpstruc (50)
	MemProtMD (40)
	OPM (10)

Symmetry Type

	Asymmetric (141)
	Cyclic (49)
	Dihedral (4)

SCOP Classification

	Membrane and cell surface proteins and peptides (24)
	All beta proteins (39)
	Alpha and beta proteins (a+b) (29)
	Artifacts (11)
	All alpha proteins (7)
	Alpha and beta proteins (a/b) (11)

AllSelected

1 to 25 of 194 Structures

Page 1 of 8

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1IWT \| pdb_00001iwt	Download File View File

Crystal Structure Analysis of Human lysozyme at 113K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWU \| pdb_00001iwu	Download File View File

Crystal Structure Analysis of Human lysozyme at 127K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWV \| pdb_00001iwv	Download File View File

Crystal Structure Analysis of Human lysozyme at 147K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWW \| pdb_00001iww	Download File View File

Crystal Structure Analysis of Human lysozyme at 152K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWX \| pdb_00001iwx	Download File View File

Crystal Structure Analysis of Human lysozyme at 161K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWY \| pdb_00001iwy	Download File View File

Crystal Structure Analysis of Human lysozyme at 170K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWZ \| pdb_00001iwz	Download File View File

Crystal Structure Analysis of Human lysozyme at 178K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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3WUL \| pdb_00003wul	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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3WUM \| pdb_00003wum	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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3WXQ \| pdb_00003wxq	Download File View File

Serial femtosecond X-ray structure of human fatty acid-binding protein type-3 (FABP3) in complex with stearic acid (C18:0) determined using X-ray free-electron laser at SACLA

Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	STE

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3WXS \| pdb_00003wxs	Download File View File

Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA)

Masuda, T., Nango, E., Sugahara, M., Mizohata, E., Tanaka, T., Tanaka, R., Suzuki, M., Mikami, B., Iwata, S.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	thaumatin I (protein)
Unique Ligands	TLA

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3WXT \| pdb_00003wxt	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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3WXU \| pdb_00003wxu	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nango, E., Suzuki, M.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4W4Q \| pdb_00004w4q	Download File View File

Glucose isomerase structure determined by serial femtosecond crystallography at SACLA

Nango, E., Tanaka, T., Sugahara, M., Suzuki, M., Iwata, S.

(2015) Nat Methods 12: 61-63

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces rubiginosus
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA

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4YOP \| pdb_00004yop	Download File View File

CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME

Sugahara, M., Nakane, T., Suzuki, M., Nango, E.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2519-2525

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4YSA \| pdb_00004ysa	Download File View File

Completely oxidized structure of copper nitrite reductase from Geobacillus thermodenitrificans

Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, NA

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4YSC \| pdb_00004ysc	Download File View File

Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis

(2016) Proc Natl Acad Sci U S A 113: 2928-2933

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Alcaligenes faecalis
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CL, CU

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4YSD \| pdb_00004ysd	Download File View File

Room temperature structure of copper nitrite reductase from Geobacillus thermodenitrificans

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	ACY, CU

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4YSE \| pdb_00004yse	Download File View File

High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis

(2016) Proc Natl Acad Sci U S A 113: 2928-2933

Released	2016-03-09
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Alcaligenes faecalis
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	ACY, CU, MPD

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4YSO \| pdb_00004yso	Download File View File

Copper nitrite reductase from Geobacillus thermodenitrificans - 0.064 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSP \| pdb_00004ysp	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.32 MGy

Fukuda, Y., Tse, K.M., Suzuki, M., Diedrichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSQ \| pdb_00004ysq	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.38 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSR \| pdb_00004ysr	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.6 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSS \| pdb_00004yss	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.7 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

Explore in 3D

4YST \| pdb_00004yst	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 24.9 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

1 to 25 of 194 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1IWT | pdb_00001iwt

1IWU | pdb_00001iwu

1IWV | pdb_00001iwv

1IWW | pdb_00001iww

1IWX | pdb_00001iwx

1IWY | pdb_00001iwy

1IWZ | pdb_00001iwz

3WUL | pdb_00003wul

3WUM | pdb_00003wum

3WXQ | pdb_00003wxq

3WXS | pdb_00003wxs

3WXT | pdb_00003wxt

3WXU | pdb_00003wxu

4W4Q | pdb_00004w4q

4YOP | pdb_00004yop

4YSA | pdb_00004ysa

4YSC | pdb_00004ysc

4YSD | pdb_00004ysd

4YSE | pdb_00004yse

4YSO | pdb_00004yso

4YSP | pdb_00004ysp

4YSQ | pdb_00004ysq

4YSR | pdb_00004ysr

4YSS | pdb_00004yss

4YST | pdb_00004yst